Table 4.
Protein–ligand contact analysis | |||
---|---|---|---|
S. no | Interaction | Spike glycoprotein- β-tocopherol complex | Spike-RBD-ACE2 protein- β sitosterol |
1 | H-bonds |
A: Gln 1002, Gln 1005, Thr1006 B: Gln 1005 C: Thr1009 |
Ser 43, Ser44, Ser 47, Met62, Asn63, Asp 67, Lys74, Ser106, Asn121, Ala348, Glu375, His378, His505, Asn508 |
2 | Hydrophobic | C: Phe 759, Leu763, Ala766, Gln1005, Val1008, Leu1012 | Phe 32, Phe40, Met62, Trp69, Leu73, Ala99, Leu100, Ala348, Tyr385, Phe390, Leu391, Tyr510 |
3 | Ionic | ||
4 | Water bridges | B: Gln 1005 | Ser43, Ser47, Asn 51,Met62, Asn63, Asp 67, Ser70, Lys 74, Ser105, Ser106, Lys114, Asn117, Leu120, Asn121, Ser124, His345, Pro346, Thr347, Ala348, His374, Glu375, His378, Glu402, Glu406, His505, Asn508, Tyr510, Ser511, Tyr515 |