Table 2.
Gene profile and organization of the D. oleifera mt genome.
| Group of genes | Gene name | Length | Start codon | Stop codon | Amino acid |
|---|---|---|---|---|---|
| ATP synthase | atp1 | 1530 | ATG | TGA | 510 |
| atp4 | 579 | ATG | TAA | 193 | |
| atp6 | 807 | ATG | TGA | 269 | |
| atp8 | 480 | ATG | TAA | 160 | |
| atp9 | 285 | ATG | TAG | 95 | |
| Cytohrome c biogenesis | ccmB | 621 | ATG | TGA | 207 |
| ccmC | 753 | ATG | TGA | 251 | |
| ccmFC∗ | 1353 | ATG | TAA | 451 | |
| ccmFN | 1755 | ATG | TGA | 585 | |
| Ubichinol cytochrome c reductase | cob | 1182 | ATG | TGA | 394 |
| Cytochrome c oxidase | cox1∗ | 1584 | ACG (ATG) | TAA | 528 |
| cox2∗∗ | 780 | ATG | TAA | 260 | |
| cox3 | 798 | ATG | TGA | 266 | |
| Maturases | matR | 1968 | ATG | TAG | 656 |
| Transport membrance protein | mttB | 375 | ATG | TAG | 125 |
| NADH dehydrogenase | nad1∗∗∗∗ | 978 | ATG | TAA | 326 |
| nad2∗∗∗∗ | 1467 | ATG | TAA | 489 | |
| nad3 | 357 | ATG | TAA | 119 | |
| nad4∗∗∗ | 1488 | ATG | TGA | 496 | |
| nad4L | 273 | ATG | TAA | 91 | |
| nad5∗∗∗∗ | 2013 | ATG | TAA | 671 | |
| nad6 | 618 | ATG | TAA | 206 | |
| nad7∗∗∗∗ | 1185 | ATG | TAG | 395 | |
| nad9 | 588 | ATG | TAG | 196 | |
| Ribosomal proteins (LSU) | rpl10 | 489 | ATG | TAA | 163 |
| rpl16 | 435 | ND | TAA | 145 | |
| rpl2∗ | 1005 | ATG | TAA | 335 | |
| rpl5 | 564 | ATG | TAA | 188 | |
| Ribosomal proteins (SSU) | rps10∗ | 333 | ACG (ATG) | CGA | 111 |
| rps12 | 378 | ATG | TGA | 126 | |
| rps13 | 351 | ATG | TGA | 117 | |
| rps14 | 303 | ATG | TAG | 101 | |
| rps19(2) | (231,231) | ATG | TAA | 77 | |
| rps3∗ | 1752 | ATG | TAG | 584 | |
| rps4 | 1326 | ATG | TAA | 442 | |
| rps7 | 447 | ATG | TAA | 149 | |
| Succinate dehydrogenase | sdh3 | 306 | ATG | TGA | 102 |
| sdh4 | 432 | ATG | TGA | 144 | |
| Ribosomal RNAs | rrn18 | 1904 | |||
| rrn26 | 3373 | ||||
| rrn5 | 119 | ||||
| Transfer RNAs | trnA-TGC∗ | 67 | |||
| trnC-GCA | 71 | ||||
| trnD-GTC | 74 | ||||
| trnE-TTC | 72 | ||||
| trnF-GAA | 74 | ||||
| trnG-GCC | 72 | ||||
| trnH-GTG | 74 | ||||
| trnI-AAT | 69 | ||||
| trnI-GAT∗ | 74 | ||||
| trnK-TTT | 73 | ||||
| trnM-CAT(4) | (73,74,74,77) | ||||
| trnN-GTT(2) | (72,72) | ||||
| trnP-TGG | 75 | ||||
| trnQ-TTG | 72 | ||||
| trnR-ACG | 74 | ||||
| trnR-TCT∗ | 72 | ||||
| trnS-GCT | 88 | ||||
| trnS-GGA | 87 | ||||
| trnS-TGA | 87 | ||||
| trnT-TGT∗ | 75 | ||||
| trnV-GAC | 72 | ||||
| trnW-CCA | 74 | ||||
| trnY-GTA | 83 |