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. 2022 Jul 15;46(1):210. doi: 10.1186/s42269-022-00892-z

Table 7.

Interaction types with surrounding amino acids of SARS CoV 2 Main Protease (PDB ID: 6XBH) with inhibitor Index number 847

Name Distance(Å) Interaction Types From From Chemistry To To Chemistry Angle º DHA Angle HAY º
A:SER144:HG -:RES1:O4 2.514 Conventional H-Bond A:SER144:HG H-Donor :RES1:O4 H-Acceptor 108.8 93.5
A:CYS145:HN -:RES1:O5 2.570 Conventional H-Bond A:CYS145:HN H-Donor :RES1:O5 H-Acceptor 161.8 137.2
A:GLU166:HN -:RES1:O3 1.866 Conventional H-Bond A:GLU166:HN H-Donor :RES1:O3 H-Acceptor 127.0 137.9
A:GLN189:HE21 -:RES1:O7 1.574 Conventional H-Bond A:GLN189:HE21 H-Donor :RES1:O7 H-Acceptor 164.8 118.5
:RES1:H24 -A:HIS163:NE2 2.402 Conventional H-Bond :RES1:H24 H-Donor A:HIS163:NE2 H-Acceptor 172.3 100.4
:RES1:H29 -A:HIE41:ND1 2.649 Conventional H-Bond :RES1:H29 H-Donor A:HIE41:ND1 H-Acceptor 123.3 92.9
:RES1:H50 -A:HIE164:O 2.200 Conventional H-Bond :RES1:H50 H-Donor A:HIE164:O H-Acceptor 121.3 151.2
A:GLY143:HA1 -:RES1:O5 3.069 Carbon H-Bond A:GLY143:HA1 H-Donor :RES1:O5 H-Acceptor 99.2 122.1
A:MET165:HA -:RES1:O3 2.676 Carbon H-Bond A:MET165:HA H-Donor :RES1:O3 H-Acceptor 127.9 125.4
:RES1:H11 -A:ASN142:OD1 2.722 Carbon H-Bond :RES1:H11 H-Donor A:ASN142:OD1 H-Acceptor 144.8 133.3
:RES1:H12 -:RES1:O3 2.347 Carbon H-Bond :RES1:H12 H-Donor :RES1:O3 H-Acceptor 119.0 90.2
:RES1:H13 -A:LEU141:O 2.247 Carbon H-Bond :RES1:H13 H-Donor A:LEU141:O H-Acceptor 145.8 113.8
:RES1:H9 -:RES1:O1 2.098 Carbon H-Bond :RES1:H9 H-Donor :RES1:O1 H-Acceptor 107.3 91.2
A:GLU166:OE1 -:RES1 4.471 Π-Anion A:GLU166:OE1 Negative :RES1 Π-Orbitals
:RES1:C31 -A:CYS44 4.628 Alkyl :RES1:C31 Alkyl A:CYS44 Alkyl
:RES1:C31 -A:MET49 4.519 Alkyl :RES1:C31 Alkyl A:MET49 Alkyl
:RES1:C32 -A:CYS44 4.050 Alkyl :RES1:C32 Alkyl A:CYS44 Alkyl
:RES1:C32 -A:MET49 4.152 Alkyl :RES1:C32 Alkyl A:MET49 Alkyl
A:HIE41 -:RES1:C32 4.043 Π-Alkyl A:HIE41 Π-Orbitals :RES1:C32 Alkyl
:RES1 -A:MET165 4.626 Π-Alkyl :RES1 Π-Orbitals A:MET165 Alkyl