TABLE 3.
Pearson linear correlation of repeat abundance with genome size variation (1Cx) in Loliinae, after PIC correction, and contribution of individual repeats to the genome size differences between species.
| Repeat type | Correlation to genome size |
Abundance in the analyzed genomes [Mbp/1Cx] |
Average contribution to pairwise differences in genome sizes [%] | ||
| R 2 | p-Value | Min | Max | ||
| Angela | 0.71 | 5.44E-07 | 1.775 | 1366.503 | 19.6 |
| TAR | 0.54 | 5.85E-05 | 1.172 | 24.058 | 0.642 |
| Tekay | 0.38 | 0.00187 | 0 | 364.516 | 6.47 |
| Ivanna | 0.35 | 0.00281 | 0 | 16.597 | 0 |
| LTR | 0.27 | 0.0111 | 0 | 480.094 | 5.49 |
| Retand | 0.21 | 0.0265 | 46.947 | 652.52 | 10.7 |
| Tork | 0.16 | 0.0566 | 0 | 5.454 | 0.0376 |
| SIRE | 0.14 | 0.0784 | 3.791 | 282.611 | 2.8 |
| MuDR_Mutator | 0.11 | 0.131 | 0 | 32.148 | 0.0986 |
| EnSpm_CACTA | 0.09 | 0.165 | 8.715 | 190.978 | 2.27 |
| Ty1_Copia | 0.08 | 0.18 | 0 | 2.514 | 0 |
| Ty3_Gypsy | 0.08 | 0.197 | 0 | 0.208 | 0 |
| Mobile_element | 0.06 | 0.257 | 0 | 103.646 | 0 |
| Ikeros | 0.05 | 0.285 | 0 | 17.96 | 0 |
| LINE | 0.05 | 0.314 | 0 | 6.74 | 0 |
| OTA | 0.03 | 0.397 | 0 | 0.379 | 0 |
| Unclassified | 0.03 | 0.438 | 197.426 | 611.73 | 4.08 |
| CRM | 0.03 | 0.443 | 8.348 | 161.049 | 0.751 |
| Repeat | 0.01 | 0.61 | 0 | 167.43 | 0 |
| Ale | 0.01 | 0.716 | 0 | 3.465 | 0 |
| PIF_Harbinger. | 0.01 | 0.737 | 0 | 5.893 | 0 |
| rDNA_5S-45S | 0.00 | 0.789 | 1.446 | 102.852 | −0.152 |
| Athila | 0.00 | 0.852 | 1.146 | 680.565 | 0.778 |
| Satellite | 0.00 | 0.863 | 30.69 | 272.468 | −0.0164 |
| Ogre | 0.00 | 0.93 | 0 | 130.467 | 0.183 |
| All repeats | 0.83 | 1.8E-09 | 591.539 | 3067.826 | 65.2 |
Only the most represented repeat types of Loliinae are shown. Significant values are highlighted in bold.