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. 2022 Jul 1;13:901733. doi: 10.3389/fpls.2022.901733

TABLE 4.

Ploidy levels and genomic pair-end read features of 5S rDNA loci and cluster graph parameters of the studied Loliinae taxa.

Taxon Ploidy level N. reads in cluster Genome proportion (%) Repeat size (bp) k-mer coverage Connected component index Graph shape (type)
Festuca abyssinica 4x 180 0.036 316 0.885 0.967 1
Festuca africana 10x 214 0.043 317 0.488 0.879 2
Festuca amplissima 6x 158 0.032 318 0.744 0.994 1
Festuca a. arundinacea 6x 369 0.074 315 0.78 0.987 1
Festuca a. letourneuxiana 10x 532 0.11 307 0.721 0.974 2
Festuca a. atlantigena 8x 428 0.086 307 0.791 0.981 2
Festuca asplundii 6x 110 0.022 318 0.894 0.982 1
Festuca caldasii 4x
Festuca capillifolia 2x 340 0.068 318 0.9 0.976 1
Festuca chimborazensis 6x 179 0.036 319 0.845 0.899 2
Festuca dracomontana 629 0.13 307 0.75 0.936 1
Festuca durandoi 2x 520 0.1 318 0.812 0.994 2
Festuca eskia 2x 525 0.1 319 0.873 0.989 2
Festuca fenas 4x 222 0.044 307 0.781 0.973 1
Festuca fimbriata 6x 104 0.021 317 0.8 0.923 1
Festuca fontqueri 2x 470 0.094 296 0.824 0.977 2
Festuca francoi 2x 632 0.13 317 0.748 0.981 2
Festuca gigantea 6x
Festuca gracillima 6x
Festuca gudoschnikovii 4x
Festuca holubii 179 0.036 318 0.863 0.944 2
Festuca lasto 2x 470 0.094 296 0.824 0.977 1
Festuca mairei 4x 330 0.066 315 0.791 0.921 1
Festuca mekiste 109 0.022 317 0.619 0.917 1
Festuca molokaiensis 208 0.042 316 0.666 0.861 2
Festuca ovina 2x 331 0.066 316 0.952 0.985 1
Festuca pampeana 8x 402 0.08 317 0.812 0.98 1
Festuca paniculata 2x 269 0.054 318 0.781 0.978 2
Festuca parvigluma 4x 190 0.038 316 0.711 0.884 1
Festuca pratensis 2x 447 0.089 545 0.832 0.911 2
Festuca procera 4x 165 0.033 317 0.863 0.976 2
Festuca pyrenaica 4x 204 0.041 316 0.62 0.941 2
Festuca pyrogea 850 0.17 326 0.602 0.955 2
Festuca rubra 6x 338 0.068 316 0.737 0.87 2
Festuca scabra 4x 232 0.046 301 0.782 0.978 2
Festuca simensis 4x 412 0.082 296 0.675 0.951 2
Festuca spectabilis 6x 1128 0.23 316 0.791 0.99 2
Festuca superba 8x 184 0.037 316 0.772 0.995 1
Festuca triflora 2x 217 0.043 262 0.498 0.982 2
Lolium canariense 2x 306 0.061 294 0.842 0.974 1
Lolium perenne 2x 447 0.089 307 0.868 0.982 1
Lolium persicum 2x 1154 0.23 307 0.832 0.976 1
Lolium rigidum 2x 892 0.18 307 0.809 0.983 1
Lolium saxatile 2x 157 0.031 308 0.914 0.975 2
Megalachne masafuerana 690 0.14 224 0.438 0.997 2
Micropyropsis tuberosa 2x 911 0.18 307 0.865 0.98 1
Vulpia ciliata 4x 414 0.083 315 0.916 0.993 2

Graph shape types (type 1, simple circular-shaped graph with one loop; type 2, complex graph with two loops where the interconnected loops represent IGS spacers). 5S clustering analysis of F. caldasii, F. gigantea, F. gracillima and F. gudoschnikovii could not be performed due to insufficient number of 5S reads in the clusters. Hyphens, missing data.