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. 2020 Nov 16;12(4):e86. doi: 10.1002/cpch.86

Figure 4.

Figure 4

Spectra assignment and stoichiometric measurement of the modified peptide. (A) Search strategy to determine the probe‐labeled site from isoTOP ABPP data. To determine the peptide containing the modification, MS1 searches for the coeluting pair with the specified mass difference are performed. To determine the residue labeled, MS2 spectra are assigned by de novo sequencing. (B) Scheme of stoichiometry measurement for modified peptide. Using a known quantity of synthetic standards of modified and total protein allows the calculation of fractional occupancy.