Table 3.
Unigenes involved in chloroplast development and division and chlorophyll biosynthesis and degradation in the H. macrophylla transcriptome
| Function | Gene name | Gene ID | log2(YB/YM) | Annotation |
|---|---|---|---|---|
| chloroplast development | DELLA | Unigene73671 | -1.42 | DELLA protein GAI |
| Unigene118449 | -1.17 | DELLA protein GAI-like | ||
| Unigene119524 | -3.21 | GA repressor DELLA | ||
| PPR | Unigene95411 | -1.22 | pentatricopeptide repeat-containing protein At1g08070 | |
| Unigene644 | -1.04 | pentatricopeptide repeat-containing protein At2g15820 | ||
| GLK | Unigene20679 | -2.17 | transcription activator GLK1 | |
| Thf1 | Unigene88785 | -1.28 | thylakoid formation1 | |
| ARF | Unigene48743 | 1.23 | auxin response factor 17 | |
| Unigene118329 | 1.94 | Auxin response factor | ||
| Unigene122697 | 1.15 | Auxin response factor | ||
| Unigene23042 | 1.02 | Auxin response factor | ||
| Unigene32938 | 1.21 | Auxin response factor | ||
| Unigene33148 | 1.79 | Auxin response factor 17 | ||
| Unigene48743 | 1.23 | Auxin response factor 17-like | ||
| Unigene56446 | 1.25 | Auxin response factor | ||
| Unigene78971 | 1.21 | Auxin response factor 1 | ||
| chloroplast division | FtsZ | Unigene65459 | -1.70 | cell division protein FtsZ homolog 2–2, chloroplastic |
| Unigene14090 | -1.08 | tubulin beta chain | ||
| Unigene62710 | -1.09 | tubulin alpha chain | ||
| MinD | Unigene3670 | -1.31 | Adenylyl-sulfate kinase | |
| AP2/ERF | Unigene42535 | -1.43 | AP2/ERF transcription factor | |
| Unigene17785 | -1.30 | AP2/ERF transcription factor | ||
| chlorophyll biosynthesis | HEMA | Unigene94259 | 0.30 | Glutamyl-tRNA reductase |
| GSA | Unigene21371 | 0.26 | Glutamate-1-semialdehyde 2,1-aminomutase | |
| HEMB | Unigene80924 | 0.07 | Delta-aminolevulinic acid dehydratase, chloroplastic | |
| Unigene54524 | 0.52 | Delta-aminolevulinic acid dehydratase, chloroplastic | ||
| HEMC | Unigene43517 | 0.62 | Porphobilinogen deaminase | |
| Unigene80400 | -0.54 | Porphobilinogen deaminase | ||
| HEMD | Unigene42585 | -0.56 | Uroporphyrinogen-III synthase | |
| Unigene106934 | 0.75 | Uroporphyrinogen-III synthase | ||
| HEME | Unigene3363 | 0.43 | Uroporphyrinogen decarboxylase | |
| Unigene103027 | 0.30 | Uroporphyrinogen decarboxylase 1, chloroplastic | ||
| Unigene6415 | 0.41 | Uroporphyrinogen decarboxylase | ||
| HEMG | Unigene34893 | 0.19 | Protoporphyrinogen oxidase | |
| Unigene106486 | 0.63 | Protoporphyrinogen oxidase | ||
| CHLH | Unigene1894 | 0.81 | Magnesium-chelatase subunit ChlH like | |
| CHLI | Unigene48515 | 0.55 | Magnesium-chelatase subunit ChlI, chloroplastic-like | |
| CHLM | Unigene22407 | -0.59 | Mg-protoporphyrin IX methyltransferase | |
| CHLG | Unigene25797 | 0.07 | Chlorophyll synthase | |
| CAO | Unigene110336 | -0.93 | Chlorophyllide an oxygenase | |
| chlorophyll degradation | NYC1 | Unigene105397 | 0.03 | Putative chlorophyll(Ide) b reductase NYC1 |
| NOL | Unigene114249 | 0.18 | Chlorophyll b reductase NOL protein | |
| CLH1 | Unigene91850 | -0.49 | chlorophyllase-1 | |
| Unigene28136 | -0.81 | chlorophyllase-2 | ||
| PPH | Unigene14410 | 0.70 | Pheophytinase | |
| Unigene43673 | -0.03 | pheophytinase | ||
| Unigene47431 | -0.55 | pheophytinase | ||
| PAO | Unigene110336 | -0.93 | Pheophorbide an oxygenase | |
| Unigene1999 | -0.69 | Pheophorbide an oxygenase | ||
| Unigene74026 | -0.10 | Pheophorbide an oxygenase | ||
| Unigene98774 | -0.66 | Pheophorbide an oxygenase | ||
| RCCR | Unigene7212 | -0.01 | Red chlorophyll catabolite reductase |