STS |
soft-tissue sarcoma |
m6A |
N6-methyladenosine |
m5C |
5-methylcytosine |
m1A |
N1-methyladenosine |
m7G |
7-methylguanosine |
Ψ |
pseudouridine |
A-to-I editing |
adenosine-to-inosine RNA editing |
MeRIP-Seq |
methylated RNA immunoprecipitation-sequencing |
METTL3 |
Methyltransferase Like 3 |
METTL14 |
Methyltransferase Like 14 |
METTL16 |
Methyltransferase Like 16 |
WTAP |
Wilms' tumor 1-associated protein |
ZC3H13 |
zinc finger CCCH-type containing 13 |
RBM15 |
RNA-binding motif protein 15 |
FTO |
obesity-associated protein |
ALKBH5 |
α-ketoglutarate-dependent dioxygenase alkB homolog 5 |
YTH |
YT521-B homology |
IGF2BP |
insulin-like growth factor 2 mRNA-binding proteins |
NSUN |
methyltransferases NOP/SUN |
ALYREF |
Aly/REF export factor |
YBX1 |
Y box binding protein 1 |
TRMT6/61A |
tRNA methyltransferase 6/61A |
TRMT61B |
tRNA methyltransferase 61B |
TRMT61C |
tRNA methyltransferase 61C |
WDR4 |
WD repeat domain 4 |
RNMT |
RNA guanine-7 methyltransferase |
TCGA |
The Cancer Genome Atlas |
GEO |
Gene Expression Omnibus |
TME |
tumor microenvironment |
GTEx |
the Genotype-Tissue Expression |
CNVs |
copy number variations |
DEGs |
differentially expressed genes |
GSVA |
gene set variation analysis |
GO |
Gene Ontology |
MSigDB |
Molecular Signatures Database |
FDR |
false discovery rate |
ssGSEA |
single-sample gene set enrichment analysis |
TMB |
tumor mutation burden |
PCA |
principal component analysis |
GGI |
gene expression grade index |
QC |
quality control |
HVG |
highly variable genes |
t-SNE |
t-distributed stochastic neighbor embedding |
GDSC |
The Genomics of Drug Sensitivity in Cancer |
HR |
hazard ratio |
CI |
confidence interval |
ROC |
receiver operating characteristic |
UVM |
uveal melanoma |
PCPG |
pheochromocytoma and paraganglioma |
TGCT |
testicular germ cell tumors |
UCEC |
uterine corpus endometrial carcinoma |
OS |
overall survival |
DFS |
disease-free survival |
MDSC |
myeloid-derived suppressor cell |
EMT |
epithelial–mesenchymal transition |
LEF1 |
lymphoid enhancer-binding factor 1. |