TABLE 1.
Hyperparameter settings of the DEL process and DGMs respectively.
Hyperparameter | DEL | Hyperparameter | DGM | |
---|---|---|---|---|
FragVAE | JTVAE | |||
Number of generations | 10 | Embedding size | 128 | 128 |
Polulation size | 20000 | Number of recurrent layers | 2 | 1 |
Initial number of epochs | 20 | Hidden state dimension | 128 | 450 |
Subsequence number of epochs | 10 | Latent space dimension | 64 | 64 |
Scheduler annealing rate | 0.8 | Learning rate | 0.0001 | 0.0001 |
Tournament selection probability | 0.95 | Batch size | 128 | 32 |
Mutation rate | 0.01 | KL divergence weight β | 0.1 | 0.1 |