TABLE 1.
General summary statistics for the Lake Trout (Salvelinus namaycush) genome assembly. The total number of chromosomes, scaffolds (including chromosomes), and contigs are listed in the top row. Metrics reported for chromosomes and scaffolds include gaps of unknown length. Consensus accuracy was obtained from the output of POLCA after running three iterations of the program
Chromosomes | Scaffolds | Contigs | Gaps | |
---|---|---|---|---|
Count | 42 | 4120 | 7378 | 3258 |
Minimum length (bp) | 22,041,605 | 9606 | 84 | 100 |
Mean length (bp) | 47,175,710 | 569,295 | 317,859 | 100 |
Max length (bp) | 98,200,354 | 98,200,354 | 34,788,501 | 100 |
Total length (bp) | 1,981,379,816 | 2,345,496,355 | 2,345,170,555 | 325,800 |
N50 (bp) | 48,336,861 | 44,976,251 | 1,804,090 | 100 |
N90 (bp) | 34,530,387 | 249,999 | 114,532 | 100 |
N95 (bp) | 26,015,404 | 84,453 | 61,568 | 100 |
Consensus accuracy (%) | ‐ | ‐ | 99.9959 | ‐ |