TABLE 2.
Number of elements, total sequence length, and percent of the Lake Trout (Salvelinus namaycush) genome occupied by retroelements, DNA transposons, and other repeat types
| No. elements | Length | Percent | |
|---|---|---|---|
| Retroelements | 551,376 | 305,755,720 | 13.04 |
| SINEs | 0 | 0 | 0.00 |
| Penelope | 11,724 | 3,138,292 | 0.13 |
| LINEs | 483,866 | 245,479,169 | 10.47 |
| CRE/SLACS | 0 | 0 | 0.00 |
| L2/CR1/Rex | 337,340 | 178,461,635 | 7.61 |
| R1/LOA/Jockey | 9131 | 2,778,587 | 0.12 |
| R2/R4/NeSL | 705 | 573,357 | 0.02 |
| RTE/Bov‐B | 28,238 | 14,293,769 | 0.61 |
| L1/CIN4 | 12,257 | 6,142,123 | 0.26 |
| LTR Elements | 67,510 | 60,276,551 | 2.57 |
| BEL/Pao | 1533 | 1,173,630 | 0.05 |
| Ty1/Copia | 1427 | 1,007,823 | 0.04 |
| Gypsy/DIRS1 | 55,237 | 49,788,865 | 2.12 |
| Retroviral | 9313 | 8,306,233 | 0.35 |
| DNA transposons | 533,707 | 233,872,078 | 9.97 |
| hobo‐Activator | 34,814 | 15,807,935 | 0.67 |
| Tc1‐IS630‐Pogo | 473,487 | 209,441,783 | 8.93 |
| En‐Spm | 0 | 0 | 0.00 |
| MuDR‐IS905 | 0 | 0 | 0.00 |
| PiggyBac | 9091 | 3,370,797 | 0.14 |
| Tourist/Harbinger | 3105 | 834,759 | 0.04 |
| Other (Mirage, P‐elements, Transib) | 1104 | 292,535 | 0.01 |
| Rolling‐circles | 348 | 227,654 | 0.01 |
| Unclassified: | 2,885,512 | 722,299,456 | 30.79 |
| All interspersed repeats | 1,261,927,254 | 53.80 |