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. 2022 Jul 19;157:116738. doi: 10.1016/j.trac.2022.116738

Table 2.

Viral proteins: functions and characteristics.

Viral proteins Functions Characteristics Refs
Envelop protein
  • (1)

    Recognize the corresponding receptors on the host cell membrane, mediate adhesion and entry into host cells;

  • (2)

    Stabilize the envelope structure;

  • (3)

    Transport substances.

  • (1)

    Highly antigenic, as a major inducer of neutralizing antibodies;

  • (2)

    Highly variable. In diagnosis, their antibodies may only recognize certain strains of the same virus family due to their high variability;

  • (3)

    Located outside the virion, enabling direct detection of intact virions.

[65,66]
Capsid protein
  • (1)

    Protect the viral genome;

  • (2)

    Mediating self-assembly;

  • (3)

    Intracellular trafficking;

  • (4)

    Evasion of host intrinsic, innate and adaptive immunity;

  • (5)

    Attachment, entry, and genome release.

  • (1)

    Some key neutralization sites (epitopes);

  • (2)

    Some variability, but is generally more conserved than envelope proteins;

  • (3)

    Ability to detect intact virus particles.

[67]
Nucleoprotein
  • (1)

    Plays an important role in virion replication, transcription, and packaging.

  • (1)

    Highly conserved, often used as a target protein in commercially available kits;

  • (2)

    The cell lysate is required for detection.

[68]
Functional protein
  • (1)

    Enzymes such as reverse transcriptase, and RNA replicase;

  • (2)

    As a primer for nucleic acid replication.

  • (1)

    Targets for traditional antiviral drug development;

  • (2)

    Rarely used as a target for viral diagnostics;

  • (3)

    The cell lysate is required for detection.

[69]