Table 3.

From the long non-coding RNA analysis, upstream binding partners are shown along with their target lncRNA. A p value and associated GO terms are shown

Upstream regulator	Target molecule in dataset	p value	GO terms and annotations
JDP2	DNM3OS	4.10E–03	DNA-binding transcription factor activity, RNA polymerase II-specific
miR-338-3p	NR2F1-AS1	4.10E–03	Negative regulation of gene expression; negative regulation of IL-6 production; negative regulation of cytokine production involved in inflammatory response
miR-150-5p	MIAT	4.10E–03	mRNA binding involved in posttranscriptional gene silencing
TARDBP	MIAT	2.03E–02	RNA polymerase II cis-regulatory region sequence-specific DNA binding
mir-150	MIAT	2.63E–02	mRNA binding involved in posttranscriptional gene silencing
PGF	DNM3OS	3.43E–02	Protein binding, signal transduction
FUS	RMRP	3.43E–02	mRNA binding, mRNA stabilization
DDX58	EGOT	4.61E–02	Double-stranded RNA binding