Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2022 Jul 19;11:giac064. doi: 10.1093/gigascience/giac064

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2022. Published by Oxford University Press GigaScience.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

PMC Copyright notice

Figure 2: — Spacemake produces uniform quality control reports. (A) Histograms showing the number of genes, reads, UMIs, and reads/UMIs ratios per spatial unit. (B) Quality control metrics plotted in tissue space. Top to bottom: number of genes, percentage of mitochondrial counts, reads/UMIs ratios, and barcode length after compression, all shown per spatial unit. (C) Nucleotide frequencies per barcode position and quantile (segregated by the number of reads). (D) Shannon entropy and string compression length of the sequenced barcodes versus the expected theoretical distributions.