TABLE 1.
Oligonucleotide sequences used in this study
Primer | Sequence (5′ to 3′) | Saccharomyces cerevisiae positions | Specificity | Reference |
---|---|---|---|---|
Set Aa | ||||
Euk1A | CTGGTTGATCCTGCCAG | 4 to 20 | Eukarya | 48 |
Euk516r-GCb | ACCAGACTTGCCCTCC | 563 to 548 | Eukarya | 2 |
Set B | ||||
Euk1209f-GCc | CAGGTCTGTGATGCCC | 1423 to 1438 | Eukarya | 14 |
Uni1392r | ACGGGCGGTGTGTRC | 1641 to 1627 | Universal | 22 |
Set C | ||||
EukA | AACCTGGTTGATCCTGCCAGT | 1 to 21 | Eukarya | 33 |
EukB | TGATCCTTCTGCAGGTTCACCTAC | 1795 to 1772 | Eukarya | 33 |
Set A was also used for T-RFLP analysis, using hexachlorofluorescein-labeled Euk1A and Euk516r without the GC clamp.
The GC clamp sequence is CGCCCGGGGCGCGCCCCGGGCGGGGCGGGGGCACGGGGGG.
The GC clamp sequence is CGCGCGCCGCGCCCCGCGCCCGTCCCGCCGCCCCCGCCCG.