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. 2001 Jul;67(7):2966–2972. doi: 10.1128/AEM.67.7.2966-2972.2001

TABLE 1.

Primers used for PCR-based cloning

Primer no. Primer designation Sequence (5′ to 3′)b Position (bp)c
1 Tri5/p1 AGATCGTACAGCTAAATTCAGAGC 15500–15523
2 Tri5/p2 CCACTAGCTCAATTGAACTTAGGA 17393–17370
3 Tri6/p1 TGGAGNGCNTTNCCNCTNTTTGA 12663–12685
4 Tri6/p2 TTGTGTATNCGNCTATAGTGATC 13276–13254
5 Tri4/p2 TCNGTYTTNCCNGGDATNGC 9757–9776
5′ Tri4/2p2 GTCGATGTCGGCTTTAGTGGTGTC 9810–9833
6 Tri4/p1 GGNCCNTAYYTNGARTTYTA 11293–11274
6′ Tri4/2p1 AGCCTTAGTCAATATCCCCATCAG 11431–11409
7 Tri3/p1 CAGCGCTATACAGATGGAAGTC 6823–6844
8 Tri3/p2 TCGGTATAGTTTGCATCATTGTAG 8487–8464
9 Tri7/p1 CGCATCGAAAGTGGAAGGTT 4618–4637
9′ Tri7/p5 TGCCTCTCCTGCCATCGTC 4750–4768
10 Tri7/p2 ATGAACCAAAATGATACCCAGATG 5823–5800
11 Tri11/p2 ACATTNAGNGGNGGCTTGTTCC 21419–21440
12 Tri11/p1 ATGTTTCAATATTCNTTNTGGCC 23140–23118
13 Tri102/p2 TGGTGNGGNACATGATCNGTNAGG 23890–23913
14 Tri102/p1 GACCTNGAATCNCAGCCNGACGAC 25661–25638
15 Itri5n/p1 ACTTGACTAGGTAGCCACGGTGTTTTATTC 15723–15694
16 Itri5n/p2 GAAAAGGTCAAGCATCAGGATACAGAGGA 17204–17232
17 Itri65/p1 GAAGTCAAAGTCGAAGCAAACAAGTGG 12878–12852
18 Itri65/p2 GCCAAGCAAATGCCCGTATCCCAGTT 12971–12996
19 Itri7n/p1 GAAACCGCGATGACCGATACTGCTGCTAAG 4837–4808
20 Itri7n/p2 GCCACAAAGCAAGACGGAGACGAAGGAG 5744–5771
21 Itri11n/p2 TAGCCGCAATTGGTACCAGGATAGCAG 21481–21455
22 Itri11n/p1 CCGCAGGGGATGGAAAAAGAGGTTGTA 22979–23005
23 I2tri5/p2 GCGATGCTGCCAGGCTCAAGGTAAAG 14905–14880
24 I2tri5/p1 AACTAATTGTCTGTAACCTGAGCCTGTAACCA 17553–17584
25 Itri4nd/p2 CYGATTGGAGGAGAACACTTGATAACATTT 9936–9907
26 Itri4n/p1 GCTTTGGTCCCGGGATCTTTCGCAGTG 11305–11331
26′ Itri4d/p1 GGACGATGGGGCCTTGAGGATGTGATG 8425–8451d
27 Itri8/p1 TTAATTTAGGCGAACAAGAGACGGAAGACAGT 1191–1160
28 Itri8/p2 AGTATCGGTCATCGCGGTTTCATTCTGG 4817–4844
29 Itri102n/p5 ATTTTGCCGGCTTTGTCTGCATCCTTCTC 24716–24688
30 Itri102nd/p1 TGAAGAACAAAGTAGGTAGYGCAGACATT 25510–25538
31 Tri6nd/p2 CACGACCAGGAAGGACAACAATG 13197–13219
32 Tri6nd/p1 CTTGGCGGGATCGGGAGAC 12713–12695
33 Tri5n/p1 GGGGAGTTGTTAGGCTTGGATTTG 14358–14335
34 Itri3nd/p1 TCCGAAGAGAAGTAGCGATGAARAGAT 6857–6931
35 Itri3d/p2 TCCGTTGAGAGCATAGACTTTGTTGTGAA 8322–8350
36 Itri53/p3 TGTATCCTGATGCTTGACCTTTTC 17227–17204
37 Itri53/p2 CTTGCAGAACTGAACAGGCGACGGTATG 18282–18309
38 Tri8/delp2 ACAGCGTGGACACAGCAACCCTTACTT 4203–4229
39 I53n/np3 TCGGCAACATGGCAACGGACTT 20553–20574
40 I11n/np4 GCTTTTCGCGCTGTTGCCGTAGG 20764–20742
41 8n/p2 AGATGAATTACCAGGCAGATGTCCAGAAGTCG 2567–2598
42 7d/p1 AGGCCGTGAAAATGAACCGCTTGATGTA 1963–1936d
43 5d/np1 CACTACGAAACTGCCGGCCATCACATA 12866–12840d
44 7d/np1 TGTGCCGTGAGCCCCAGAATGAAGC 2271–2247d
45 I7d/p1 ACGGTGTACGAGTGGTTTGTGTCCTATTCA 2363–2392d
46 Itri102d/p4 TATCCCTCTTTCTCCTTGGTGACTACTGG 21988–22016d
47 Tri5d/p4 TGGTTTGGGTCATTGTGTTGGGGCTTCT 14063–14090d
48 I11d/np4 TGCTTTCATTAATTTTCGCTTTTC 17990–17967d
48′ I11d/np2 CTTGCAACTTTAACGTGTCCAGAT 20533–20556d
49 I4d/np3 ATGGCAAGTTATGGGGTCAGC 9187–9207d
50 Itri102nd/p2 GCTAATGTCTACTACTTCGCTATGGCACTGG 21122–21092d
a

Shown in Fig. 1

b

R = A or G; Y = C or T; D = A or G or T; N = A or C or G or T. 

c

According to the deposited sequence (GenBank accession no. AF336365; from G. zeae 88-1). 

d

According to the deposited sequence (GenBank accession no. AF336366; from G. zeae H-11).