TABLE 3.
Levels of L3 RT-PCR amplicon homology for reference reovirus strains and environmental isolates
| Isolate | % Homology
|
|||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RV3 | GBRV3 | RV1 | GBRV1 | RV-E | RV-A | RV-B | RV-C | RV-D | RV-F | RV-G | RV-H | RV2 | GBRV2 | |
| RV3 | 100 | |||||||||||||
| GBRV3 | 100 | 100 | ||||||||||||
| RV1 | 97.5 | 97.5 | 100 | |||||||||||
| GBRV1 | 97.5 | 97.8 | 100 | 100 | ||||||||||
| RV-E | 97.2 | 97.2 | 96.8 | 96.8 | 100 | |||||||||
| RV-A | 95.8 | 95.2 | 96.2 | 95.5 | 95.2 | 100 | ||||||||
| RV-B | 95.6 | 95.6 | 96.0 | 96.0 | 95.2 | 100 | 100 | |||||||
| RV-C | 87.9 | 88.3 | 88.7 | 89.1 | 88.3 | 87.9 | 87.6 | 100 | ||||||
| RV-D | 88.1 | 87.5 | 88.8 | 88.2 | 88.3 | 88.3 | 87.6 | 100 | 100 | |||||
| RV-F | 87.6 | 87.6 | 88.3 | 88.3 | 88.3 | 87.6 | 87.6 | 100 | 100 | 100 | ||||
| RV-G | 85.9 | 85.9 | 86.3 | 86.3 | 87.2 | 86.8 | 86.8 | 85.1 | 85.1 | 85.1 | 100 | |||
| RV-H | 80.7 | 80.7 | 80.7 | 80.7 | 81.5 | 81.1 | 81.1 | 81.5 | 81.5 | 81.5 | 82.7 | 100 | ||
| RV2 | 79.2 | 79.2 | 78.8 | 78.8 | 79.1 | 79.6 | 78.3 | 78.4 | 78.4 | 77.1 | 75.5 | 77.1 | 100 | |
| GBRV2 | 79.1 | 80.3 | 78.7 | 80.0 | 79.1 | 79.1 | 78.7 | 78.5 | 78.6 | 77.1 | 75.9 | 77.5 | 100 | 100 |