Table 3.
Troubleshooting guide for neurotoxicity evaluation induced by nanomaterials.
| Problem | Possible Cause | Solution |
|---|---|---|
| No or few eggs collected after sucrose gradient centrifugation (Basic Protocol 1). | Insufficient release of eggs | Extend the bleaching treatment for 3 more minutes |
| The nematodes were at the wrong stage. | “Chunk” plates a day later, in addition to day 1 (Step 1, BP1). | |
| The total number of nematodes (both alive and dead) on the plate is lower than that two days ago (Basic Protocol 2). | Nematodes were dried up in the inner wall of the NGM plate. | Check the inner wall of the NGM Petri dish. Maintain proper humidity conditions. |
| Locomotion behavior data has a large standard deviation (Basic Protocol 3). | There might be one or two “outliers” in the data pool. | When observing the nematodes, leave out the nematodes moving aberrantly fast or slow (e.g. > 2 fold or < 0.5 fold than the average speed in the same exposure group). |
| The sample number is too low. | Increase sample number. | |
| No difference in GFP/RFP signals between groups (Basic Protocol 4). | Dose too low/ exposure time too short | Adjust exposure conditions: extend exposure duration and/or incubate with nanomaterials at higher doses |
| Signal below or above the detection limit of the plate reader. | Adjust the number of nematodes in each well until the fluorescent signals of 100, 500, 1000 and 5000 worms are linear. | |
| Autofluorescence from nanomaterials interferes with the signal. | Check the negative control wells from BP4 step 2 and see whether fluorescent signal is detectable in the serial dilution of nanomaterials. | |
| The nanomaterial tested at the specific dose induces ROS but does not activate skn-1-dependent pathways. | Examine with other assays, such as H2DCFHDA fluorescent probe (Yoon, Lee, & Cha, 2018; Zheng, Chen, et al., 2020), to verify whether oxidative stress is induced by the nanomaterial. |