Table 2.
Summary of TEs in the TME7 genome assembly
| Category | Phase0, % | Phase1, % | Average, % |
|---|---|---|---|
| LTR/Copia | 6.24 | 6.25 | 6.25 |
| LTR/Gypsy | 35.36 | 36.22 | 35.79 |
| LTR/unknown | 8.49 | 8.46 | 8.48 |
| TIR/CACTA | 0.64 | 0.63 | 0.64 |
| TIR/Mutator | 0.90 | 0.88 | 0.89 |
| TIR/PIF_Harbinger | 0.13 | 0.16 | 0.15 |
| TIR/Tc1_Mariner | 0.01 | 0.01 | 0.01 |
| TIR/hAT | 0.77 | 0.67 | 0.72 |
| LINE/unknown | 0.44 | 0.44 | 0.44 |
| DNA/Helitron | 0.02 | 0.03 | 0.03 |
| Repeat/unknown | 6.05 | 5.45 | 5.75 |
| Total LTR | 50.09 | 50.93 | 50.51 |
| Total DNA TE | 2.47 | 2.38 | 2.43 |
| Total TE | 59.06 | 59.19 | 59.13 |
LTR, long terminal repeat; TE, transposable element; TIR, terminal inverted repeat.