TABLE 2.
List of promoter regions of the BRs signaling-related genes containing the CpG/CpNpG motifs.
| Promoter ID | Gene name | Begin site | End site | Length | G + C frequency | CpG o/e ratio | At Skew | CG Skew | Start-p | Strand | Strand-p |
|---|---|---|---|---|---|---|---|---|---|---|---|
| LOC_Os01g52050 | OsBRI1 | 51 | 1524 | 1450 | 0.54 | 1.08 | −0.05 | −0.14 | 0.72 | − | 0.79 |
| LOC_Os08g07760 | OsBAK1 | 890 | 1500 | 611 | 0.53 | 0.98 | 0.19 | −0.09 | 0.49 | − | 0.96 |
| LOC_Os07g39220 | OsBZR1 | 1 | 1500 | 1500 | 0.54 | 0.77 | 0.05 | −0.09 | 0.38 | − | 0.84 |
| LOC_Os06g49080 | OsLIC | 22 | 1500 | 1479 | 0.54 | 1.16 | −0.01 | −0.01 | 0.8 | + | 0.5 |
| LOC_Os06g03710 | OsDLT | 1 | 1153 | 1153 | 0.55 | 1.04 | −0.05 | −0.04 | 0.67 | + | 0.53 |
| LOC_Os03g13010 | OsTUD1 | 1 | 684 | 684 | 0.49 | 0.9 | 0.03 | 0.07 | 0.34 | + | 0.65 |
| LOC_Os04g49230 | OsRAVL1 | 190 | 1500 | 1311 | 0.58 | 1.01 | 0.08 | −0.16 | 0.68 | − | 0.95 |
| LOC_Os04g56850 | OsARF11 | 1 | 1167 | 1167 | 0.55 | 0.82 | −0.07 | 0.06 | 0.4 | + | 0.83 |
| LOC_Os06g48950 | OsARF19 | 836 | 1500 | 665 | 0.54 | 0.87 | 0.02 | 0.04 | 0.38 | + | 0.57 |
| LOC_Os03g49990 | OsRGA1 | 810 | 1500 | 691 | 0.51 | 0.78 | −0.04 | −0.02 | 0.25 | + | 0.53 |
| LOC_Os02g22130 | OsGAP1 | 233 | 1500 | 1268 | 0.51 | 0.93 | 0.03 | −0.01 | 0.51 | − | 0.61 |
| LOC_Os05g32270 | OsRLA1 | 1 | 1167 | 1167 | 0.6 | 0.87 | −0.07 | −0.07 | 0.52 | − | 0.55 |
| LOC_Os03g44500 | OsPPKL1 | 630 | 1500 | 871 | 0.61 | 1.05 | 0.05 | −0.22 | 0.68 | - | 0.97 |
| LOC_Os05g05240 | OsPPKL2 | 619 | 1500 | 882 | 0.56 | 0.77 | −0.04 | −0.16 | 0.31 | − | 0.85 |
| LOC_Os12g42310 | OsPPKL3 | 760 | 1500 | 741 | 0.55 | 0.91 | 0.09 | 0.01 | 0.44 | − | 0.7 |
| LOC_Os03g45420 | OsPUB24 | 147 | 1500 | 1354 | 0.5 | 0.79 | −0.05 | 0.1 | 0.34 | + | 0.88 |
| LOC_Os01g12690 | OsOFP1 | 1 | 815 | 815 | 0.54 | 0.98 | −0.07 | 0.04 | 0.53 | + | 0.79 |
| LOC_Os01g64430 | OsOFP8 | 913 | 1488 | 576 | 0.5 | 0.52 | −0.13 | −0.32 | 0.08 | − | 0.95 |
| LOC_Os06g12210 | OsBU1 | 971 | 1500 | 530 | 0.52 | 0.83 | 0.07 | −0.2 | 0.3 | − | 0.97 |
| LOC_Os05g27730 | OsWRKY53 | 722 | 1500 | 779 | 0.54 | 1.23 | −0 | −0.36 | 0.79 | − | 0.99 |
| LOC_Os03g08754 | OsMADS47 | 959 | 1500 | 542 | 0.5 | 0.88 | −0.29 | −0.09 | 0.34 | + | 0.88 |
| LOC_Os02g52340 | OsMADS22 | 56 | 1500 | 1445 | 0.6 | 0.95 | −0.09 | −0.19 | 0.64 | − | 0.83 |
| LOC_Os06g11330 | OsMADS55 | 789 | 1500 | 712 | 0.54 | 1.03 | −0.27 | −0.09 | 0.57 | + | 0.87 |
| LOC_Os06g15620 | OsGSR1 | 865 | 1500 | 636 | 0.51 | 0.8 | 0.09 | −0.23 | 0.28 | − | 0.98 |
| LOC_Os03g38210 | OsGAMYBL2 | 1 | 1114 | 1114 | 0.52 | 0.67 | −0.16 | −0.14 | 0.22 | − | 0.54 |
| LOC_Os01g12890 | OsEMF1 | 1 | 1126 | 1126 | 0.58 | 1.09 | −0.22 | −0.29 | 0.73 | − | 0.82 |
| LOC_Os02g47280 | OsGRF4 | 714 | 1500 | 787 | 0.55 | 1.1 | 0.2 | −0.02 | 0.68 | − | 0.92 |
| LOC_Os04g54900 | OsILI1 | 814 | 1500 | 687 | 0.49 | 0.71 | 0.09 | −0.2 | 0.19 | − | 0.98 |
| LOC_Os06g06090 | OsMAPK6 | 1001 | 1500 | 500 | 0.5 | 0.91 | 0.18 | −0.29 | 0.36 | − | 1 |
| LOC_Os05g06280 | OsBHS1 | 853 | 1500 | 648 | 0.58 | 1 | 0.19 | −0.13 | 0.57 | − | 0.98 |