Table 5.

Comparative repetitive elements of Hi‐C pseudo‐molecules and HiFiasm assembly

Macadamia jansenii pseudo‐molecules	Genome assembler	Size of pseudo‐molecules	Total repeats (%)	LINE (%)	LTR (%)	DNA elements (%)	Unclassified (%)	Simple repeats (%)
Chr 1	Hi‐C	67 682 215	62	4.13	30.3	0.52	26.8	0.64
	HiFiasm	71 935 981	62.2	3.88	34.8	0.58	22.6	0.65
Chr 2	Hi‐C	63 669 590	66	3.31	38.2	1.12	23.3	0.86
	HiFiasm	74 041 379	68	2.98	39.6	1.22	23.8	0.44
Chr 3	Hi‐C	58 143 993	52.3	6.15	20.5	1.13	24.2	0.67
	HiFiasm	59 310 972	54.3	7.93	20.7	0.97	24.1	0.72
Chr 4	Hi‐C	56 076 407	55.1	6.26	22.8	0.79	24.3	1.13
	HiFiasm	57 081 251	57.2	7.21	21.6	0.90	26.56	1.23
Chr 5	Hi‐C	55 220 784	53.1	3.27	31.4	0.96	17.0	0.78
	HiFiasm	56 513 637	54.3	3.47	31.6	0.75	17.9	0.85
Chr 6	Hi‐C	53 595 462	55.1	8.75	19.9	1.18	25.5	0.79
	HiFiasm	57 251 071	58.8	9.47	22.6	1.43	24.0	1.44
Chr 7	Hi‐C	52 077 970	52.9	7.04	21.3	1.42	22.4	0.85
	HiFiasm	54 758 790	51.2	6.65	21.3	1.25	21.4	0.79
Chr 8	Hi‐C	49 563 658	44.0	5.39	15.5	0.64	21.3	1.25
	HiFiasm	52 239 994	41.8	6.25	22.0	1.30	12.3	0
Chr 9	Hi‐C	49 085 581	48.1	5.39	18.4	1.76	22.0	0.86
	HiFiasm	49 176 982	45.9	5.41	24.8	1.65	14.0	0
Chr 10	Hi‐C	48 974 653	48.1	6.24	17.3	0.90	22.8	1.02
	HiFiasm	49 863 231	44.7	5.91	22.9	2.82	13.1	0
Chr 11	Hi‐C	47 698 009	48.1	6.24	17.3	0.90	22.8	1.02
	HiFiasm	48 320 516	44.7	4.01	26.3	2.82	11.6	0
Chr 12	Hi‐C	46 713 600	44.6	4.47	16.5	1.39	21.3	0.85
	HiFiasm	51 378 064	25.6	4.47	21.2	2.44	11.7	0
Chr 13	Hi‐C	45 610 911	42.2	5.52	13.7	0.70	21.1	1.31
	HiFiasm	47 997 562	39.7	5.42	18.8	1.63	13.8	0
Chr 14	Hi‐C	45 288 529	42.5	5.82	12.9	0.96	21.5	1.50
	HiFiasm	46 131 124	41.1	5.53	19.6	1.94	13.9	0