Extended Data Fig. 5. Syntenic gene retention and gene features.
Violin plots showing different levels of CDS length (A), gene length (B), number of predicted protein-protein interactions (C), expression level (D), gene-upstream TE density (E), genic-region TE density (F), gene-downstream TE density (G), gene methylation (H) and nucleotide diversity (I) for Nelumbo genes from those with the greatest number of monocot species being syntenic (I) to those with the minimum (IV). One-way Kruskal–Wallis test significance is shown on the top of each violin plot (adjusted P values).