Table 5.
Details of 15 predicted ICEs and 7 IMEs.
| Isolate | Location (nt) | GC content (%) | Length (bp) | Direct repeats | Type |
|---|---|---|---|---|---|
| PM1-7 | 1809473..1902135 | 44.85 | 92,663 | Putative ICE with T4SS | |
| PM1-8 | 2873874..2966537 | 44.85 | 92,664 | † | Putative ICE with T4SS |
| 3727325..4093850 | 41.37 | 366,526 | attL: 3727325..3727339 (agaggtcattgtgca) attR: 4093836..4093850 (agaggtcattgtgca) |
Putative ICE with T4SS | |
| PM1-9 | 1810225..1902887 | 44.85 | 92,663 | ≠ | Putative ICE with T4SS |
| PM2-6 | 1741700..1935382 | 41.39 | 193,683 | attL: 1741700..1741714 (ttttgaatgacataa) attR: 1935368..1935382 (ttttgaatgacataa) |
Putative ICE with T4SS |
| PM2-10 | 3589109..3824596 | 40.54 | 235,488 | attL: 3589109..3589124 (taattgccattatatt) attR: 3824581..3824596 (taattgccattatatt) |
Putative ICE with T4SS |
| PM3-1 | 3795192..3926392 | 44.63 | 131,201 | attL: 3795192..3795206 (agatacattttgttt) attR: 3926378..3926392 (agatacattttgttt) |
Putative ICE with T4SS |
| 1308600..1414471 | 43.22 | 105,872 | attL: 1308600..1308614 (tattgccgctttaat) attR: 1414457..1414471 (tattgccgctttaat) |
Putative ICE with T4SS | |
| PM3-2 | 1678276..1746776 | 43.40 | 68,501 | attL: 1678276..1678290 (taaaagcaacagcat) attR: 1746762..1746776 (taaaagcaacagcat) |
Putative ICE with T4SS |
| PM3-3 | 3696382..3796909 | 41.98 | 100,528 | attL: 3696382..3696396 (taatgctattttttt) attR: 3796895..3796909 (taatgctattttttt) |
Putative ICE with T4SS |
| PM3-4 | 1678055..1746555 | 43.40 | 68,501 | attL: 1678055..1678069 (taaaagcaacagcat) attR: 1746541..1746555 (taaaagcaacagcat) |
Putative ICE with T4SS |
| PM3-5 | 3524314..3652232 | 42.17 | 127,919 | attL: 3524314..3524328 (ataaaatacttttta) attR: 3652218..3652232 (ataaaatacttttta) |
Putative ICE with T4SS |
| PM3-6 | 3603558..3866601 | 40.46 | 263,044 | attL: 3603558..3603573 (tctgtgcagtaaaaaa) attR: 3866586..3866601 (tctgtgcagtaaaaaa) |
Putative ICE with T4SS |
| PM3-9 | 3601557..3864543 | 40.45 | 262,987 | attL: 3601557..3601572 (tctgtgcagtaaaaaa) attR: 3864528..3864543 (tctgtgcagtaaaaaa) |
Putative ICE with T4SS |
| PM3-10 | 3716853..3757384 | 44.69 | 40,532 | – | Putative ICE with T4SS |
| PM2-3 | 3790440..3819943 | 44.38 | 29,504 | attL: 3790440..3790454 (caaaaccataaaacc) attR: 3819929..3819943 (caaaaccataaaacc) |
Putative IME |
| PM2-5 | 3363919..3384240 | 40.87 | 20,322 | attL: 3363919..3363933 (ccaaaaaatgcatta) attR: 3384226..3384240 (ccaaaaaatgcatta) |
Putative IME |
| PM2-6 | 3316029..3385857 | 36.68 | 69,829 | attL: 3316029..3316044 (aaaatattagtgagta) attR: 3385842..3385857 (aaaatattagtgagta) |
Putative IME |
| 3853151..3907640 | 45.54 | 54,490 | †† | Putative IME | |
| PM2-10 | 3847018..3872472 | 42.51 | 25,455 | attL: 3847018..3847032 (cgctgatgcagtaac) attR: 3872458..3872472 (cgctgatgcagtaac) |
Putative IME |
| PM3-5 | 1510679..1556480 | 40.12 | 45,802 | attL: 1510679..1510694 (cagcaatggatattta) attR: 1556465..1556480 (cagcaatggatattta) |
Putative IME |
| PM3-8 | 3864568..3889007 | 42.45 | 24,440 | attL: 3864568..3864582 (cgctgatgcagtaac) attR: 3888993..3889007 (cgctgatgcagtaac) |
Putative IME |
† attL: 2873874..2873925 (atggtgcccggactcggaatcgaaccaaggacacggggattttcaatcccct); attR: 2966486..2966537 (atggtgcccggactcggaatcgaaccaaggacacggggattttcaatcccct).
≠ attL: 1810225..1810276 (atggtgcccggactcggaatcgaaccaaggacacggggattttcaatcccct); attR: 1902836..1902887 (atggtgcccggactcggaatcgaaccaaggacacggggattttcaatcccct).
†† attL: 3853151..3853228 (ggattgttcacccactaatagggaacgtgagctgggtttagaccgtcgtgagacaggttagttttaccctactgatga); attR: 3907563..3907640 (ggattgttcacccaccaatagggaacgtgagctgggtttagaccgtcgtgagacaggttagttttaccctactgatga).