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. 2022 Jun 2;2:896295. doi: 10.3389/fbinf.2022.896295

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Copyright © 2022 Kagaya, Flannery, Jain and Kihara.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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The prediction performance of ensemble methods with ContactPFP. (A) The average Fmax score of ensemble methods with ContactPFP. Results of all the combinations of 1–5 methods are shown. Patterns in the bar graphs show the number of methods combined. The bars are sorted by their Fmax scores. CPFP, ContactPFP; PHYLO, Phylo-PFP; BLAST, PSI-BLAST. (B) Fmax score distribution of the ensemble method with ContactPFP, Phylo-PFP, and PSI-BLAST, the combination with the highest Fmax score, and distributions of individual methods shown in violin plots. The three horizontal bars in a plot indicate the maximum, median, and minimum values. (C) Comparison of Fmax scores of individual target proteins by the best ensemble method and Phylo-PFP. Each point represents a target protein in the benchmark dataset. (D) Comparison of Fmax scores of individual target proteins by the ContactPFP + PhyloPFP and ContactPFP + PSI-BLAST.