Table 2.
Quality Control of the RNA-Sequencing Analysis
| Group | Sample | Total reads | Total mapped | CleanGC | CleanQ20 | CleanQ30 |
|---|---|---|---|---|---|---|
| Rosa26-LSL-IE2+/-,cre | B | 26,578,833 | 92.51% | 49.51; 49.38 | 97.57; 95.40 | 93.61; 90.77 |
| C | 28,219,745 | 93.02% | 48.81; 48.78 | 97.55; 95.53 | 93.46; 90.30 | |
| E | 23,773,646 | 93.17% | 49.92; 49.60 | 97.71; 95.19 | 94.00; 90.52 | |
| Rosa26-LSL-IE2+/- | IE2 | 25,531,997 | 95.93% | 50.49; 50.31 | 97.64; 96.87 | 93.85; 92.57 |
| IE3 | 23,681,012 | 96.71% | 50.42; 50.18 | 97.74; 97.13 | 94.03; 93.07 | |
| IE4 | 21,074,033 | 96.35% | 50.20; 50.04 | 97.56; 96.50 | 93.64; 91.82 | |
| Wild-type | WT1 | 25,010,863 | 93.38% | 50.27; 50.19 | 97.41; 93.92 | 93.02; 87.89 |
| WT2 | 25,536,067 | 94.87% | 50.01; 49.75 | 97.82; 95.43 | 94.17; 90.64 | |
| WT3 | 31,992,416 | 95.30% | 50.38; 50.33 | 97.67; 95.52 | 93.76; 90.42 |
GC, Guanine and cytosine; Q20, Quality_20; Q30, Quality_30; WT, Wild-Type.