TABLE 4.
Number of SNPs and regions identified in genome‐wide scans for selection
| Brazil | Niger | Senegal | Tanzania | |
|---|---|---|---|---|
| Outlier SNVs (h‐scan) | 4366 | 44,024 | 9182 | 2 |
| Outlier SNVs (sweepfinder) | 12,871 | 41,525 | 23,379 | 4288 |
| Merged regions (1/3 Mb) | 113 | 250 | 168 | 46 |
| 99th Percentile SNPs | 703 | 239 | 176 | 0 |
| Outlier SNPs (pcadapt) a | 442 | 442 | 442 | Na |
| Putative regions under selection | 5 | 3 | 3 | 0 |
| Genes in selected regions | 116 | 112 | 157 | 0 |
| Genes w/99th percentile SNPs | 10 | 5 | 7 | 0 |
Abbreviations: SNP, single nucleotide polymorphism; SNV, single nucleotide variant.
a
Outlier SNPs are those that are greater than the maximum value derived from neutrally simulated data.