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Intronic regions included in the CAPP-seq selector.
| Gene | Introns | Size (bp) | Disease |
|---|---|---|---|
| EWSR1 | 7–10 | 5,100 | EWS |
| FLI1 | 4–8 | 37,229 | EWS |
| FUS | 5–8 | 4,422 | EWS |
| PAX3 | 6–7 | 19,562 | RMS |
| PAX7 | 7 | 32,334 | RMS |
| TP53 | 1, 9 | 13,574 | OS |
| ATRX | 12, 15 | 18,413 | OS |
| SS18 | 10 | 4,700 | SS |
| SSX1 | 4 | 3,134 | SS |
| SSX2 | 4 | 1,865 | SS |
| SSX4 | 1, 4 | 2,333 | SS |
| Total | 150,602 |
Abbreviations: EWS, Ewing sarcoma; RMS, rhabdomyosarcoma; OS, osteosarcoma; SS, synovial sarcoma.
