Table 3.
Additional outputs for two or more CGPs
| Output name | Description |
|---|---|
| DEP × CGP matrix file | A merged matrix of DEPs (using the user-selected statistics) with genes or probes as rows and CGPs as columns. |
| Heatmap (500 most varying genes/probes) | A clustered heatmap of the 500 most varying genes or probes across CGPs. The value displayed is the user-selected statistic for the DEP × CGP matrix. |
| Number of Significant DE Genes per CGP Bar Plot | A bar plot showing the number of statistically significant differentially expressed genes for each CGP. |