Table 4.

Outputs using the RankProd statistical method

Parameter	Description
pfp	Estimated percentage of false positive (pfp) up to the position of each gene per direction of change (i.e., up-regulated and down-regulated genes). Pfp is similar to the false discovery rate (FDR).
Pval	Estimated p-value for being up-regulated or down-regulated for each gene
Fc.avg	Log fold change of average expression in condition 1 over average expression in condition 2
Fc (per CGP)	Log fold change for each CGP (labeled by the name of the CGP)