Table 3.
Summary of the sequencing data
| Sample | Raw data (Read) | Valid data (Read) | Valid ratio (reads) | Q20% | Q30% | Mapping ratio (%) | Uniquely mapping ratio (%) |
|---|---|---|---|---|---|---|---|
| PI1_1_1 | 46,672,000 | 43,777,082 | 93.80 | 99.90 | 98.16 | 91.19 | 71.60 |
| PI1_1_2 | 55,303,680 | 54,438,122 | 98.43 | 99.96 | 97.62 | 90.26 | 62.78 |
| PI1_1_3 | 52,495,452 | 51,658,394 | 98.41 | 99.95 | 97.69 | 90.33 | 61.21 |
| PI1_2_1 | 46,231,246 | 42,962,038 | 92.93 | 99.90 | 96.56 | 88.59 | 61.36 |
| PI1_2_2 | 54,278,584 | 53,514,012 | 98.59 | 99.95 | 97.73 | 91.96 | 65.06 |
| PI1_2_3 | 54,769,968 | 53,925,824 | 98.46 | 99.94 | 97.75 | 88.72 | 61.88 |
| PI1_3_1 | 51,166,820 | 49,164,564 | 96.09 | 99.93 | 98.45 | 92.64 | 72.30 |
| PI1_3_2 | 52,532,212 | 51,697,290 | 98.41 | 99.95 | 97.78 | 91.22 | 64.04 |
| PI1_3_3 | 45,986,064 | 45,183,688 | 98.26 | 99.96 | 97.83 | 90.88 | 61.80 |
| PI2_1_1 | 46,882,160 | 38,554,402 | 82.24 | 99.88 | 97.54 | 91.54 | 71.47 |
| PI2_1_2 | 45,124,654 | 44,266,558 | 98.10 | 99.95 | 97.91 | 92.45 | 65.21 |
| PI2_1_3 | 45,916,574 | 45,092,032 | 98.20 | 99.95 | 97.86 | 92.13 | 63.57 |
| PI2_2_1 | 54,499,658 | 40,992,052 | 75.22 | 99.88 | 97.65 | 92.20 | 71.92 |
| PI2_2_2 | 50,182,808 | 49,245,826 | 98.13 | 99.96 | 97.81 | 90.65 | 52.07 |
| PI2_2_3 | 47,783,578 | 46,862,666 | 98.07 | 99.95 | 97.95 | 91.80 | 59.52 |
| PI2_3_1 | 46,391,044 | 44,477,492 | 95.88 | 99.92 | 97.79 | 92.40 | 70.11 |
| PI2_3_2 | 54,313,700 | 53,199,290 | 97.95 | 99.95 | 97.69 | 90.69 | 53.20 |
| PI2_3_3 | 48,570,786 | 47,771,482 | 98.35 | 99.97 | 98.02 | 92.36 | 65.40 |
| PJ1_1_1 | 53,199,986 | 51,407,886 | 96.63 | 99.92 | 98.41 | 96.31 | 82.11 |
| PJ1_1_2 | 44,622,192 | 43,962,360 | 98.52 | 99.97 | 98.00 | 96.12 | 76.47 |
| PJ1_1_3 | 43,855,496 | 43,082,982 | 98.24 | 99.95 | 98.08 | 93.66 | 70.54 |
| PJ1_2_1 | 55,741,922 | 53,605,796 | 96.17 | 99.92 | 98.29 | 93.95 | 79.29 |
| PJ1_2_2 | 37,248,018 | 36,505,478 | 98.01 | 99.95 | 97.98 | 88.48 | 63.04 |
| PJ1_2_3 | 37,286,646 | 36,660,902 | 98.32 | 99.95 | 97.96 | 91.68 | 65.34 |
| PJ1_3_1 | 52,609,210 | 49,952,606 | 94.95 | 99.91 | 98.08 | 95.27 | 81.31 |
| PJ1_3_2 | 49,341,424 | 48,357,314 | 98.01 | 99.94 | 97.90 | 90.58 | 64.46 |
| PJ1_3_3 | 48,576,570 | 47,660,482 | 98.11 | 99.94 | 97.87 | 94.03 | 67.23 |
| PJ2_1_1 | 49,395,192 | 47,433,530 | 96.03 | 99.93 | 98.48 | 96.06 | 82.40 |
| PJ2_1_2 | 46,207,324 | 45,412,494 | 98.28 | 99.94 | 98.03 | 95.40 | 72.43 |
| PJ2_1_3 | 44,442,954 | 43,744,244 | 98.43 | 99.94 | 98.14 | 96.61 | 78.43 |
| PJ2_2_1 | 47,629,448 | 45,549,538 | 95.63 | 99.92 | 97.92 | 95.75 | 81.61 |
| PJ2_2_2 | 40,919,178 | 40,166,796 | 98.16 | 99.94 | 97.94 | 91.75 | 66.12 |
| PJ2_2_3 | 43,186,432 | 42,432,400 | 98.25 | 99.94 | 97.62 | 92.91 | 60.36 |
| PJ2_3_1 | 52,876,728 | 50,297,096 | 95.12 | 99.93 | 98.38 | 96.21 | 81.99 |
| PJ2_3_2 | 45,110,644 | 44,285,424 | 98.17 | 99.94 | 97.71 | 91.91 | 62.55 |
| PJ2_3_3 | 44,588,938 | 43,769,630 | 98.16 | 99.94 | 97.68 | 92.42 | 56.99 |