Table 2.
Prediction of the relative binding affinity between ouabain and the binding pockets of non-structural ZIKV proteins. The third, fourth, and fifth columns comprise the score obtained in the molecular docking step, free energy of binding (in kcal/mol) obtained by the MM/PPBSA method, and binding enthalpy (in kcal/mol), respectively.
Molecular target | Binding site (BS) | Edocking | ∆Gbind | ∆Hbind |
---|---|---|---|---|
NS3-Helicase | 0 | 17.94 | − 1.92 ± 0.65 | − 90.55 ± 10.35 |
1 | 24.03 | − 4.16 ± 0.58 | − 109.93 ± 11.09 | |
2 | 17.21 | − 0.71 ± 0.46 | − 83.80 ± 13.94 | |
3 | 17.01 | − 4.44 ± 0.60 | − 94.55 ± 12.07 | |
4 | 22.78 | − 2.18 ± 0.37 | − 89.79 ± 13.31 | |
5 | 20.77 | − 9.48 ± 0.44 | − 117.30 ± 10.32 | |
6 | 18.89 | − 1.90 ± 0.56 | − 86.59 ± 9.08 | |
7 | 24.04 | − 5.54 ± 0.55 | − 106.66 ± 8.16 | |
8 | 19.76 | − 0.92 ± 0.57 | − 85.86 ± 14.28 | |
9 | 19.23 | − 5.11 ± 0.35 | − 94.61 ± 14.57 | |
NS5-Mtase | 0 | 25.63 | − 4.79 ± 0.52 | − 116.68 ± 13.97 |
1 | 27.09 | − 0.95 ± 0.35 | − 76.64 ± 12.62 | |
NS5-RdRp | 0 | – | – | – |
1 | 17.38 | − 10.58 ± 0.77 | − 121.76 ± 14.21 |