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. 2022 Jun 30;27(2):150–164. doi: 10.3746/pnf.2022.27.2.150

Table 2.

Tools available for nutrigenomics research

Tools Description Website
GRS Modern compression method to store and analyze data from Genome ReSequencing (Fenech et al., 2011). http://gmdd.shgmo.org/Computational-Biology/GRS
BioConductor Used for the analysis of sample size and relative power on gene expression profiling data. Bioconductor - Help
Booly A web tool and warehousing framework with a basic but scalable data model paired with the ability to conduct an efficient comparative analysis, including the use of Boolean logic to merge datasets and an advanced aliasing system to decode the same gene or protein’s separate names (Do et al., 2010). http://booly.ucsd.edu/
SMM Newly designed tool to research a foodborne pathogen, Salmonella enterica. https://foodsafety.sjtu.edu.cn/SMM-system.html