Table 2.
Unique taxa with highest mean abundances from original and updated processing.
| Genus | Count | Maximum Relative Abundance | Minimum Relative Abundance | Mean Relative Abundance | |
|---|---|---|---|---|---|
| Original Processing | Serratia | 200 | 95.8583359 | 0.00107388 | 2.67694661 |
| Escherichia | 120 | 77.6694728 | 0.00072271 | 2.13110697 | |
| Clostridium | 210 | 82.1156486 | 0.00230984 | 0.6235074 | |
| Enterobacter | 108 | 43.4458227 | 0.00072271 | 0.23072134 | |
| Updated Processing | Escherichia/Shigella* | 85 | 99.8775177 | 0.01175254 | 4.91545093 |
| Cutibacterium | 178 | 58.8692498 | 0.01118443 | 3.94134097 | |
| Actinotignum | 53 | 64.7708383 | 0.00987882 | 0.62764323 | |
| Clostridium_sensu_stricto ^ | 44 | 88.5600496 | 0.00498915 | 0.52225445 | |
| Proteus | 9 | 71.5686275 | 0.0122444 | 0.37338724 | |
| Ezakiella | 72 | 13.1103903 | 0.003139 | 0.22165684 | |
| Methylophilus | 67 | 4.84244259 | 0.00356837 | 0.21395235 |
Only taxa with mean relative abundances >0.2 listed here. For full lists of unique taxa from original and updated analyses, refer to Supplemental Tables 2, 3 , respectively.
*The SILVA database classifies as Escherichia/Shigella while other databases (e.g., Greengenes in the original analysis) classify as Escherichia. Thus, this classification appears unique within original and updated datasets but could refer to similar genera.
^Classified as Clostridium_sensu_stricto in updated analysis using the SILVA database. It is unclear if this is a subset of Clostridium, or if this name in SILVA refers to the genus Clostridium from the Greengenes database.