TABLE 2.
Bacterial species found through shotgun metagenomic sequencing, using a fragment recruitment plotting approach, and sorted by class.
| Taxonomy | WGF | MFC | MFO | PFA | PFR | PAU | PAA | PAR1 | PAR2 |
| Actinobacteria | 0.10 | 1.19 | 0.44 | 1.39 | 1.54 | 1.45 | 0.32 | 0.57 | 1.11 |
| Actinosynnema mirum | 0.40 | ||||||||
| Aeromicrobium massiliense | 0.26 | 0.20 | |||||||
| Agrococcus jejuensis | 0.12 | ||||||||
| Brachybacterium paraconglomeratum | 0.11 | 0.03 | 0.06 | ||||||
| Cellulosimicrobium cellulans | 0.06 | ||||||||
| Corynebacterium casei | 1.24 | ||||||||
| Corynebacterium glyciniphilum | 0.13 | ||||||||
| Curtobacterium citreum | 0.05 | ||||||||
| Curtobacterium flaccumfaciens | 0.06 | 0.04 | |||||||
| Curtobacterium luteum | 0.03 | ||||||||
| Curtobacterium oceanosedimentum | 0.09 | 0.09 | 0.18 | ||||||
| Curtobacterium plantarum | 0.04 | 0.77 | 0.03 | 0.18 | 0.04 | ||||
| Curtobacterium pusillum | 0.33 | 0.18 | |||||||
| Friedmanniella sagamiharensis | 0.04 | ||||||||
| Gordonia lacunae | 0.15 | ||||||||
| Gordonia terrae | 0.16 | 0.03 | 0.10 | 0.24* | 0.27* | ||||
| Leucobacter japonicus | 0.06 | ||||||||
| Leucobacter musarum | 0.05 | ||||||||
| Microbacterium lemovicicum | 0.82 | ||||||||
| Microbacterium oxydans | 0.34 | 0.12 | |||||||
| Nocardioides alkalitolerans | 0.15* | ||||||||
| Pseudonocardia alni | 0.11 | 0.16 | 0.31 | ||||||
| Rhodococcus kroppenstedtii | 0.03 | ||||||||
| Sanguibacter keddieii | 0.11 | 0.08 | |||||||
| Streptomyces cyaneofuscatus | 0.06 | ||||||||
| Bacteroidetes | 0.00 | 0.00 | 0.28 | 1.66 | 0.81 | 0.21 | 3.37 | 0.00 | 17.55 |
| Chryseobacerium artocarpi | 1.27 | 15.59 | |||||||
| Chryseobacterium balustinum | 0.12 | ||||||||
| Chryseobacterium cucumeris | 0.03 | ||||||||
| Chryseobacterium halperniae | 0.09 | ||||||||
| Chryseobacterium indoltheticum | 0.11* | 0.48 | |||||||
| Chryseobacterium piscium | 0.13 | ||||||||
| Chryseobacterium scophthalmum | 0.07 | 0.76 | |||||||
| Chryseobacterium ureilyticum | 0.15 | 1.77 | |||||||
| Pedobacter agri | 0.17* | 0.60* | 0.04 | ||||||
| Sphingobacterium deserti | 1.46* | 0.10 | 0.21 | 0.42* | 0.13 | ||||
| Sphingobacterium siyangense | 0.12 | ||||||||
| Spirosoma rigui | 0.06* | ||||||||
| Deinococcus-Thermus | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.08 | 0.22 | 0.00 | 0.00 |
| Deinococcus gobiensis | 0.08 | 0.22 | |||||||
| Firmicutes | 0.73 | 6.18 | 4.28 | 0.13 | 1.32 | 19.48 | 0.83 | 1.46 | 23.21 |
| Enterococcus casseliflavus | 0.10 | 0.03 | 0.08 | 0.04 | |||||
| Enterococcus faecium | 6.18 | ||||||||
| Exiguobacterium acetylicum | 0.05 | 0.05 | |||||||
| Exiguobacterium enclense | 0.03 | 0.04 | |||||||
| Exiguobacterium indicum | 0.03 | 0.05 | |||||||
| Lactococcus lactis subsp. hordniae | 0.05 | 0.03 | 0.05 | ||||||
| Lactococcus lactis subsp. lactis | 0.14 | 0.06 | 0.04 | 0.14 | |||||
| Leuconostoc citreum | 0.05 | ||||||||
| Leuconostoc pseudomesenteroides | 0.73 | 3.38 | 0.06 | 0.05 | |||||
| Mammaliicoccus sciuri | 0.05 | 13.81 | 0.15 | 0.93 | 15.72 | ||||
| Saccharibacillus sacchari | 0.16 | ||||||||
| Staphylococcus gallinarum | 0.03 | ||||||||
| Staphylococcus pragensis | 0.03 | ||||||||
| Staphylococcus schleiferi | 0.93 | 0.21 | 0.91 | ||||||
| Staphylococcus xylosus | 0.07 | 5.67 | 0.10* | 2.32 | 7.21* | ||||
| Weissella bombi | 0.03 | ||||||||
| Weissella cibaria | 0.58 | 0.04 | |||||||
| Flavobacteria | 0.00 | 0.00 | 0.00 | 0.24 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| Dyadobacter fermentans | 0.24* | ||||||||
| Alphaproteobacteria | 0.15 | 0.20 | 0.12 | 0.73 | 0.33 | 0.23 | 0.38 | 0.04 | 0.25 |
| Asaia platycodi | 0.13 | 0.04 | |||||||
| Aureimonas altamirensis | 0.36* | 0.12 | 0.09 | 0.04 | |||||
| Aureimonas ferruginea | 0.17* | 0.07 | 0.07 | ||||||
| Aureimonas ureilytica | 0.20* | ||||||||
| Brevundimonas vesicularis | 0.03 | 0.04 | |||||||
| Gluconobacter frateurii | 0.08 | 0.08 | |||||||
| Gluconobacter kondonii | 0.07 | ||||||||
| Ochrobactrum pseudogrignonense | 0.04 | 0.15 | 0.09 | ||||||
| Sphingomonas aeria | 0.14 | 0.07 | 0.11 | 0.05 | |||||
| Sphingomonas paucimobilis | 0.03 | ||||||||
| Sphingomonas rubra | 0.16* | ||||||||
| Betaproteobacteria | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.03 | 0.10 | 0.29 |
| Achromobacter mucicolens | 0.08 | ||||||||
| Acidovorax avenae | 0.05 | 0.10 | |||||||
| Acidovorax citrulli | 0.05 | 0.11 | |||||||
| Massilia aurea | 0.03 | ||||||||
| Gammaproteobacteria | 67.07 | 2.62 | 4.43 | 0.06 | 5.97 | 1.91 | 6.89 | 27.74 | 9.26 |
| Acinetobacter bereziniae | 0.22 | ||||||||
| Acinetobacter johnsonii | 0.13 | 0.05 | |||||||
| Acinetobacter radioresistens | 0.04 | ||||||||
| Acinetobacter soli | 0.27 | ||||||||
| Enterobacter asburiae | 1.80 | 0.09 | |||||||
| Enterobacter bugandensis | 1.18 | 0.32 | |||||||
| Enterobacter cancerogenus | 0.04 | 2.45 | |||||||
| Enterobacter chengduensis | 2.09 | ||||||||
| Enterobacter chuandaensis | 0.99 | 0.04 | |||||||
| Enterobacter hormaechei | 0.60 | ||||||||
| Enterobacter huaxiensis | 0.24 | 0.06 | 0.07 | ||||||
| Enterobacter kobei | 0.47 | ||||||||
| Enterobacter ludwigii | 0.04 | ||||||||
| Enterobacter mori | 1.44 | ||||||||
| Enterobacter roggenkampii | 16.47 | 0.05 | |||||||
| Enterobacter sichuanensis | 1.00 | 0.03 | |||||||
| Enterobacter tabaci | 2.59 | ||||||||
| Enterobacter xiangfangensis | 2.47 | 0.07 | |||||||
| Erwinia dacicola | 0.18 | ||||||||
| Erwinia iniecta | 0.28 | ||||||||
| Kluyvera ascorbata | 0.04 | ||||||||
| Kluyvera cryocrescens | 0.04 | ||||||||
| Kosakonia cowanii | 0.10 | 0.10 | 0.56 | 0.15 | 0.57 | ||||
| Leclercia adecarboxylata | 0.05 | ||||||||
| Lelliottia nimipressularisa | 40.42 | ||||||||
| Pantoea agglomerans | 0.74 | 0.03 | 0.14 | 0.04 | |||||
| Pantoea ananatis | 2.40 | 0.12 | |||||||
| Pantoea anthophila | 0.14 | 0.20 | 2.12 | ||||||
| Pantoea coffeiphila | 1.66 | ||||||||
| Pantoea deleyi | 0.09 | ||||||||
| Pantoea dispersa | 0.04 | 0.03 | |||||||
| Pantoea eucrina | 0.18 | 0.08 | |||||||
| Pantoea sesami | 2.56 | ||||||||
| Pantoea stewartii subsp. indologenes | 0.05 | ||||||||
| Pantoea vagans | 1.70 | 0.14 | 1.85 | 0.20 | 0.23 | 2.23 | 0.18 | ||
| Pantoea wallisii | 2.68* | 0.56 | |||||||
| Pseudomonas argentinensis | 0.52 | 1.20 | 0.91 | 0.46 | |||||
| Pseudomonas coleopterorum | 0.05 | ||||||||
| Pseudomonas entomophila | 0.15 | ||||||||
| Pseudomonas extremorientalis | 0.24 | ||||||||
| Pseudomonas fulva | 0.07 | 0.19 | 0.17 | 2.39 | |||||
| Pseudomonas helleri | 0.05 | 1.49 | |||||||
| Pseudomonas oleovorans | 0.05 | 0.12 | 0.06 | 0.19 | 0.07 | ||||
| Pseudomonas oryzihabitans | 0.06 | 0.13 | 0.07 | 0.19 | 0.07 | ||||
| Pseudomonas parafulva | 0.06 | ||||||||
| Pseudomonas psychrotolerans | 0.06 | 0.14 | 0.06 | 0.20 | 0.07 | ||||
| Pseudomonas punonensis | 0.17 | 0.35 | 0.30 | 0.14 | |||||
| Pseudomonas putida | 1.16* | ||||||||
| Pseudomonas soli | 0.20 | 0.19 | |||||||
| Pseudomonas straminea | 0.45 | 0.96 | 0.78 | 0.4 | |||||
| Serratia liquefaciens | 0.05 | 0.06 | |||||||
| Serratia marcescens | 0.06 | ||||||||
| Serratia nematophilia | 0.05 | ||||||||
| Serratia ureilytica | 0.41 | 0.05 | |||||||
| Stenotrophomonas bentonitica | 0.04 | 0.14 | 0.06 | 0.21 | |||||
| Stenotrophomonas indicatrix | 0.26 | 0.29 | |||||||
| Stenotrophomonas lactitubi | 2.52 | 0.45 | |||||||
| Stenotrophomonas maltophilia | 0.50 | 0.25 | 3.47 | 1.66 | |||||
| Stenotrophomonas pavanii | 0.21 | 0.22 | 1.19 | ||||||
| Stenotrophomonas rhizophila | 0.46 | ||||||||
| Xanthomonas arboricola | 0.03 | ||||||||
| Xanthomonas retroflexus | 0.22 | 0.31 |
Only species with an average percentage sequence identity of more than 90% or species for which one of the read clouds had a sequence identity of more than 90% were considered. A dark green cell denotes an average percentage sequence identity between 95 and 100%; a light green cell denotes an average percentage sequence identity between 90 and 95%; and a yellow cell denotes an average percentage sequence identity between 80 and 90%. An asterisk denotes the presence of two read clouds in the fragment recruitment plot. The numbers in the cells correspond to the relative percentage of reads aligning to a species. For each class, the total relative percentage is reported. WGF, white guava fruits; MFC, closed medlar flowers; MFO, open medlar flowers; PFA, almost ripe passion fruits; PFR, ripe passion fruits; PAU, unripe papaya fruits; PAA, almost ripe papaya fruits; PAR1 and PAR2, ripe papaya fruits.