Table 2. Estimated Ka/Ks ratios of the duplicated LOX genes in turnip.
Gene name | Gene name | Ka | Ks | Ka/Ks | Duplication type |
---|---|---|---|---|---|
BrrLOX7 | BrrLOX8 | 0 | 0 | NA | Tandem duplication |
BrrLOX9 | BrrLOX10 | 0.031829569 | 0.1236034 | 0.257513701 | Tandem duplication |
BrrLOX9 | BrrLOX11 | 0.039085368 | 0.140370417 | 0.278444483 | Tandem duplication |
BrrLOX9 | BrrLOX12 | 0.063227762 | 0.13126891 | 0.481665936 | Tandem duplication |
BrrLOX10 | BrrLOX11 | 0.048024707 | 0.128237559 | 0.374497979 | Tandem duplication |
BrrLOX10 | BrrLOX12 | 0.066902608 | 0.117764339 | 0.568105835 | Tandem duplication |
BrrLOX11 | BrrLOX12 | 0.057649265 | 0.131984388 | 0.436788515 | Tandem duplication |
BrrLOX2 | BrrLOX6 | 0.034172652 | 0.327625452 | 0.10430402 | WGD or segmental duplication |
BrrLOX4 | BrrLOX13 | 0.047264236 | 0.380220011 | 0.124307597 | WGD or segmental duplication |
BrrLOX5 | BrrLOX14 | 0.107959478 | 0.941074251 | 0.114719405 | WGD or segmental duplication |
BrrLOX14 | BrrLOX15 | 0.033123836 | 0.41651106 | 0.079526906 | WGD or segmental duplication |
Notes.
- Ka
- non-synonymous substitution rate
- Ks
- synonymous substitution rate
- Ka/Ks
- the average number of non-synonymous sites