Table 2.
Targeted Analyte | Materials and Methods | Equipment | Samples and Handling | Performance | Reference |
---|---|---|---|---|---|
PRV | Fluorescent immunochromatographic strip, anti-PRV gB monoclonal antibodies, 3D-printed customized pocket fluorescence observation instrument |
None | Homogenized pig tissues | LOD of 0.13 ng/mL. Detection within 13 min | [147] |
Porcine epidemic diarrhea virus (PEDV) | LFA test, antibody-functionalized gold nanoparticles, 3D-printed transmittance reader, image analysis | Smartphone | PEDV solution | LOD of 55 ng/mL. Linear detection range: 78–20 × 103 ng/mL | [148] |
Bovine ephemeral fever virus (BEFV) | RPA 1, FAM 2, and biotin labeled amplicons, LFA | TwistAmp NFO kit for RPA amplification, heat block | RNA isolation from clinical samples and reverse transcription | LOD of eight copies per reaction. Coincidence rate with real-time PCR of 96.09%. Detection in 25 min | [149] |
BVDV | Immunochromato-graphic test strip, anti-NS3 monoclonal antibody 46/1-conjugated gold nanoparticles | None | Leukocyte extracts | Sensitivity and specificity of 100% and 97.2%, respectively. Detection in 15 min | [150] |
FMDV | LFA test, gold nanoparticles, monoclonal anti-FMDV antibody 1F10 or 2H6 | None | Homogenized epithelial suspensions | Sensitivity of 84% for 1F10 and 88% for 2H6. Specificity of 99% for both antibodies | [151,152] |
FMDV viral RNA | RT-LAMP, FIP 3 and BIP 4 labeling at the 5′ terminus with fluorescein and biotin, LFA test | Water bath | RNA, epithelial suspensions spiked with FMD virus, epithelial samples, air samples, RNA isolation | LOD of 10 viral copies | [153] |
FMDV viral RNA | RT-RPA-, FAM-, and biotin-labeled amplicons, LFA | TwistAmp NFO kit for RPA amplification, water bath | cDNA, reverse transcription, RNA isolation | LOD of 10 copies (plasmid DNA), 98.6% concordance with real-time PCR | [154] |
ASFV DNA | RPA, FITC 5, and biotin labeled amplicons, LFA | TwistAmp NFO kit for RPA amplification, thermocycler | DNA isolated with a magnetic bead-based kit | Positive agreement of 100% with PCR. Detection in 15 min | [155] |
Classical Swine Fever (CSFV) | Fluorescent microsphere (FM)-based LFA, monoclonal-antibody-functionalized FMs | Fluorescent immunochromatographic strip reader, fluorescent camera | Tissue extracts | LOD of 5.28 ng/mL, positive coincidence rate, negative coincidence rate, and total coincidence rate of 95.8%, 100%, and 98%, respectively. Detection within 15 min |
[156] |
CSFV RNA | RT-LAMP-, DIG 6-, and FITC-labeled amplicons, LFA | Thermocycler | Cell-culture supernatants, serum, RNA isolation | LOD of 100 copies per reaction. Detection in 70 min | [157] |
PCV-2 antibodies | Immunochromatographic test strip, recombinant-Cap-protein-labeled colloidal gold | None | Serum samples | Agreement of 94% with commercial ELISA. Sensitivity and specificity of 93.14% and 98.70%, respectively. Detection in 5 min | [158] |
PRRSV antibodies | Immunochromatographic test strip, PRRSV recombinant membrane and nucleocapsid proteins, Protein-G-conjugated gold nanoparticles | None | Serum samples | Sensitivity of 98.6%, specificity of 97.8%, accuracy of 98.3% | [159] |
Salmonella hilA gene | LAMP-, FITC-, and biotin-labeled amplicons, LFA test | Heating block | DNA isolated with commercial kit | LOD values of 13.5 × 10−3 ng/mL of genomic DNA and 6.7 CFU/mL. Detection in 40 min | [160] |
Salmonella Typhimurium DNA | RPA-, DIG-, and FAM-labeled amplicons, LFA | TwistAmp RPA reaction kit. Thermostatic water bath | DNA isolated with commercial kit | LOD of 10−6 ng (genomic DNA) and 1.95 CFU/mL in milk samples. Detection in less than 20 min | [161] |
Brucella spp. | Multiple cross-displacement amplification, FITC- and biotin-labeling of amplicons, LFA utilizing dye streptavidin-coated polymer nanoparticles | Water bath or heat block | Human- and goat-serum samples, DNA extraction | LOD of 10−5 ng of templates (pure cultures). Detection in 70 min | [162] |
Campylobacter jejuni and Campylobacter coli | LFA test, gold nanoparticles, monoclonal mouse anti–Campylobacter A and/or B |
None | Chicken feces, dilution with saline, filtration, sedimentation for 10 min | LOD of 6.7 log CFU/g for Campylobacter jejuni or 7.1 log CFU/g for Campylobacter coli. Detection in 20 min | [163] |
Mycobacterium avium subsp. paratuberculosis | RPA, labeled amplicons, LFA | TwistAmp RPA reaction kit, thermostatic water tank | DNA extracted with commercial kit | LOD of eight copies per reaction. Sensitivity and specificity of 100% and 97.63%, respectively. Detection in 35 min | [164] |
Mycoplasma ovipneumoniae DNA | LAMP-, DIG-, and biotin-labeled amplicons, LFA | Water bath | Lung tissue sample, DNA extraction | LOD of 100 CFU/mL. Sensitivity of 86% in clinical samples, Detection in 70 min | [165] |
1 RPA: recombinase polymerase amplification, 2 FAM: fluorescein amidite, 3 FIP: forward inner primer, 4 BIP: backward inner primer, 5 FITC: fluorescein isothiocyanate, 6 DIG: digoxigenin.