TABLE 3.
Phylogenetic assignment of clones with Sab values > 0.8 to RDP database entriesa
| Clone | Closest NCBI database matchb | % Similarity | Putative phylum | RDP placementc | T-RF length (bp) |
|---|---|---|---|---|---|
| Ac62 | Uncultured eubacterium (AF010078) | 99 | Holophaga/Acidobacterium | Unclassified | 92 |
| Ac74 | Agricultural soil bacterium SC-I-49 (AJ252638) | 98 | Holophaga/Acidobacterium | Unclassified | 95 |
| Ac20 | Uncultured eubacterium (AF010016) | 99 | Holophaga/Acidobacterium | Unclassified | 214 |
| Ac14 | Unclassified clone (Z95735) | 96 | Holophaga/Acidobacterium | Unclassified | 221 |
| Ac1 | Uncultured bacterium Riz 104 (AJ244314) | 97 | Holophaga/Acidobacterium | Unclassified | 222 |
| Ac69 | Unclassified clone (Z95725) | 94 | Holophaga/Acidobacterium | Unclassified | 222 |
| Ac92 | Unclassified clone (Z95728) | 97 | Holophaga/Acidobacterium | Unclassified | 222 |
| Ac42 | Uncultured eubacterium (AJ232842) | 97 | Holophaga/Acidobacterium | Unclassified | 222 |
| Ac51 | Clone RB40 (Z95721) | 98 | Holophaga/Acidobacterium | Environmental clone RB40 group | 222 |
| Ac71 | Agricultural soil bacterium SC-I-19 (AJ252622) | 96 | Holophaga/Acidobacterium | Environmental clone RB40 group | 222 |
| Ac87 | Grassland soil clone saf2 414 (AF078262) | 98 | Holophaga/Acidobacterium | Environmental clone RB40 group | 233 |
| Ac43 | Soil bacterium SC-I-19 (AJ252622) | 96 | Holophaga/Acidobacterium | Environmental clone RB40 group | 235 |
| Ac50 | Arthrobacter globiformis (M23411) | 97 | High-G+C gram-positives | Arthrobacter + relatives | 229 |
| Ac56 | Streptomycetaceae (X87316) | 96 | High-G+C gram-positives | Streptomyces + relatives | 76 |
| Ac52 | Clone Riz 1098 (AJ244354) | 98 | Low-G+C gram-positives | B. megaterium group | 232 |
| Ac11 | Bacillus benzoevorans (D78311) | 97 | Low-G+C gram-positives | B. megaterium group | 231 |
| Ac31 | Clostridium lituseburense (M59107) | 97 | Low-G+C gram-positives | C. lituseburense group | 290 |
| Ac36 | Uncultured copper smeltery bacterium D62 (AF337830) | 96 | α-Proteobacteria | Sphingomonas group | 88 |
| Ac48 | Metal-contaminated soil clone (AF145868) | 99 | α-Proteobacteria | Unclassified | 39 |
| Ac68 | Uncultured eubacterium (AF270944) | 97 | α-Proteobacteria | Rhizobium-Agrobacterium group | 195 |
| Ac38 | Rhizosphere clone RSC-II-42 (AJ252682) | 96 | γ-Proteobacteria | Xanthomonas group | 39 |
| Ac67 | Clone EA25 (U51864) | 99 | Verrucomicrobiales | Prosthecobacter group | 237 |
| Ac57 | Uncultured bacterium DA101 (Y07576) | 95 | Verrucomicrobiales | Prosthecobacter group | 237 |
a
Tentative phylogenetic placement and percent similarity values were determined by BLAST and are based on approximately 500 bp of the 16S rRNA gene sequence for each clone.
b
Accession numbers of closest database matches are given in parentheses.
c
The tentative phylogenetic placement was determined by using the Sequence Match option in the RDP.