Table 4.
Distance of interaction between ligand and TLR4 amino acids.
| Ligand | Amino Acid | Interaction | Type | Distance |
|---|---|---|---|---|
| IP | ILE52 | Hydrophobic | Pi-sigma, Pi-sigma, Pi-sigma, Pi-Alkyl | 3.3891, 3.89425, 3.44148, 4.62034 |
| PHE121 | Hydrophobic | Pi-Pi stacked, Pi-Pi stacked | 4.14965, 4.64929 | |
| PHE151 | Hydrophobic | Pi-Pi T-shaped | 5.84498 | |
| LEU61 | Hydrophobic | Pi-Alkyl | 5.18222 | |
| ILE32 | Hydrophobic | Pi-Alkyl | 5.47123 | |
| VAL48 | Hydrophobic | Pi-Alkyl | 5.16885 | |
| DahA | PHE119 | Hydrophobic | Pi-Pi stacked, Pi-Pi stacked, Pi-Pi stacked | 5.52106, 4.47965, 5.42439 |
| PHE121 | Hydrophobic | Pi-Pi stacked, Pi-Pi stacked, Pi-Pi stacked | 5.11694, 3.86586, 3.74824 |