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. 2022 Jun 29;14(7):1429. doi: 10.3390/v14071429

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© 2022 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).

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Reads covering potential recombination breakpoints. Reads that mapped perfectly to the GTPV strain or the LSDV vaccine strains were first removed from the B-0517_DNA and B-0517_PCR datasets. Potential recombination breakpoints were subsequently identified by mapping the remaining reads against the genomes of LSDV/Russia/Saratov/2017 (red), KZ-Kostanay-2018 (grey), LSDV/Russia/Udmurtiya/2019 (lime) or 20L42/Quyet-Thang/VNM/20 (pink), allowing no mismatches. The number of paired-end reads is indicated in the top right corner of each subplot.