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Summarized within and between host/species recombination patterns identified by RDP4, for alphaCoVs (A) and betaCoVs (B). For each sHCoV species, recombining CoVs are shown; non-human and sHCoV (black arrows), within sHCoV species (blue arrows), and between sHCoV species (green arrows). In orange is a lone human CoV (FJ415324) that clusters with ungulate and canine CoVs. Figure generated using Biorender.
