Table 3.
Mean pairwise genetic distances for each sHCoV species derived from WGS and four ORFs from dataset D4. In bold is the highest pairwise distance for each ORF/WGS and underlined is the highest pairwise distance for each sHCoV species.
| sHCoV Species | WGS | Spike | Envelope | Membrane | Nucleocapsid |
|---|---|---|---|---|---|
| 229E | 0.0048 | 0.0348 | 0.0040 | 0.0079 | 0.0121 |
| NL63 | 0.0081 | 0.0362 | 0.0077 | 0.0081 | 0.0076 |
| OC43 | 0.0076 | 0.0268 | 0.0085 | 0.0082 | 0.0077 |
| HKU1_all | 0.0222 | 0.1040 | 0.0795 | 0.0176 | 0.0231 |
| HKU1 Genotype A | 0.0028 | 0.0049 | 0.0010 | 0.0020 | 0.0062 |
| HKU1 Genotype B | 0.0122 | 0.0120 | 0.0072 | 0.0039 | 0.0049 |