Table 3.
Summary of sequence capture data. Sample IDs separated with an (/) indicate that samples were pooled to increase DNA quantities; in these samples DNA (µg) is additive. The Schistosomatid life stage is indicated as A (adult), M (miracidia) or C (cercariae). nq = not quantified.
| Taxa | Sample ID | Life Stage | DNA [µg] | No. of Contigs | No. of bp | UCEs |
|---|---|---|---|---|---|---|
| Schistosomatidae | ||||||
| Anserobilharzia brantae | W352/W340 | C | 0.562 | 1158 | 330,978 | 48 |
| W335 | C | nq | 16,743 | 4,870,006 | 1334 | |
| W351 | C | >0.005 | 5907 | 1,836,149 | 551 | |
| Austrobilharzia variglandis | W396/359 | A | 0.0352 | 145 | 35,487 | 6 |
| W697 | A | 0.0193 | 8344 | 2,495,016 | 1440 | |
| Bilharziella polonica | W930 | A | 0.0155 | 17,081 | 5,897,771 | 1677 |
| Bivitellobilharzia nairi | W465 | M | 0.078 | 18,455 | 5,052,402 | 1336 |
| BN2011 | M | nq | 3696 | 1,162,332 | 47 | |
| Dendritobilharzia pulverulenta | W836 | A | nq | 26,978 | 8,405,837 | 1737 |
| W926 | A | 0.0944 | 47,498 | 14,794,680 | 1631 | |
| Gigantobilharzia huronensis | W414/513 | C | 0.0375 | 242,326 | 72,500,699 | 1650 |
| W678 | C | 0.0325 | 48,623 | 16,046,122 | 1582 | |
| Heterobilharzia americana | W805 | A | 0.133 | 442,043 | 139,396,852 | 1784 |
| Macrobilharzia macrobilharzia | W931 | A | 0.0472 | 3508 | 1,580,643 | 1590 |
| Marinabilharzia patagonense | W637A | C | 0.163 | 34,871 | 13,736,793 | 1749 |
| Ornithobilharzia canaliculata | W393 | A | 0.15 | 31,569 | 8,873,305 | 1441 |
| Schistosomatium douthitti | SAL95.60 | C | nq | 15,755 | 4,482,586 | 597 |
| Schistosoma bovis | PM1 | C | nq | 6316 | 4,181,809 | 1873 |
| Schistosoma nasale | W546 | C | 0.0107 | 41,764 | 14,799,490 | 1830 |
| Schistosoma spindale | W545 | C | 0.0062 | 15,206 | 5,394,821 | 1885 |
| Schistosoma edwardiense | W957 | C | nq | 21210 | 8,383,839 | 1800 |
| Schistosoma sp. | W555 | C | 0.1455 | 15,865 | 7,245,729 | 1862 |
| Trichobilharzia querquedulae | W929 | A | 0.0224 | 70,532 | 21,183,008 | 1576 |
| Trichobilharzia stagnicolae | W233 | C | 0.0531 | 18,675 | 13,662 | 658 |
| Trichobilharzia cf. szidati | W620A | C | nq | 48,011 | 15,967,522 | 1123 |
| Avian Schistosomatidae sp. A | W613 | A | 0.091 | 10,458 | 3,571,057 | 1511 |
| Avian Schistosomatidae sp. B | W399 | C | 0.0905 | 9349 | 2,995,586 | 1115 |
| Avian Schistosomatidae sp. C2 | W402 | C | 0.0845 | 15,168 | 4,939,724 | 849 |
| Avian Schistosomatidae sp. C4 | W847 | C | nq | 35,118 | 10,814,130 | 1732 |
| Avian Schistosomatidae sp. C11 | W607 | C | 0.265 | 34,656 | 53,303 | 1599 |
| Avian Schistosomatidae sp. C11 | W616A | C | 0.084 | 32,003 | 10,790,620 | 1409 |
| Avian Schistosomatidae sp. D | W342 | C | 0.43 | 13,126 | 3,804,186 | 171 |
| Avian Schistosomatidae sp. G | W877 | C | nq | 1227 | 356,239 | 330 |
| Avian Schistosomatidae lineage 2 | W634 | C | nq | 6368 | 1,553,874 | 419 |
| Avian Schistosomatidae lineage 3 | C1 | C | nq | 2576 | 764,111 | 458 |
| Schistosomatidae sp. W688 | W688 | C | 0.0337 | 8006 | 3,890,904 | 1428 |
| Non-Schistosomatidae | ||||||
| Vasotrema cf. robustum | W411 | C | nq | 17,681 | 4,449,659 | 372 |
| Spirorchiidae | W702 | C | nq | 47,339 | 15,477,172 | 885 |
| Vasotrema cf. robustum | PS | C | nq | 41,958 | 12,949,767 | 473 |