Table 3.
Comparison of NB‐LRR genes identified in two different isogenic B. vulgaris ssp. vulgaris genome assemblies by R‐protein motif/domain‐based search (PDS) and by full‐length Homology‐based R‐gene Prediction (HRP)
| Protein domains a | PDS | HRP | ||
|---|---|---|---|---|
| RefBeet‐1.2 | RefBv‐1.0 | RefBeet‐1.2 | RefBv‐1.0 | |
| Full‐length | ||||
| CC‐NB‐LRR | 95 | 144 | 176 | 170 |
| RPW8‐NB‐LRR | 1 | 1 | 1 | 1 |
| TIR‐NB‐LRR | 1 | 1 | 1 | 1 |
| Total full‐length | 97 | 146 | 178 | 172 |
| Partial | ||||
| CC | 10 | 9 | 2 | 6 |
| CC‐NB | 5 | 4 | 1 | 4 |
| CC‐LRR | 14 | – | – | – |
| TIR‐NB | 2 | 2 | 2 | 2 |
| NB | 30 | 31 | 26 | 29 |
| TIR | 2 | 1 | 2 | 1 |
| LRR | 43 | 42 | 20 | 40 |
| Total partial | 106 | 89 | 53 | 82 |
| Total | 203 | 235 | 231 | 254 |
a
CC: coiled coil; LRR: leucine‐rich repeat; NB: nucleotide binding; RPW8: resistance to powdery mildew 8; TIR: Toll/interleukin receptor.