TABLE 2.
Key event relationship (KER) title | Description | Examples of empirical evidence |
---|---|---|
Increases in Oxidative DNA damage leads to Inadequate DNA repair | At steady state, oxidative lesions generated by endogenous free radicals are readily repaired by basal repair mechanisms, mainly base excision repair (BER), to maintain baseline levels. However, if the level of oxidative DNA lesions (i.e., oxidized bases, abasic sites, strand breaks) increases above a cell's ability to detoxify, an exceeded repair capacity can lead to lack of, or faulty repair (i.e., increase in unrepaired lesions, repair intermediates, mispaired bases) – all indicators of inadequate DNA repair. |
Concentration/Dose Concordance
Temporal Concordance
Other types of evidence |
Inadequate DNA repair leads to Increases in DNA strand breaks | Exceeded BER capacity due to an increase in oxidative lesions can lead to an accumulation of repair intermediates, including AP sites and SSBs. Increase in the number of SSBs elevates the risk of two SSBs occurring in close proximity to each other; if two SSBs occur on opposite strands, it may be converted into a DSB, exacerbating the damage. Increase in unrepaired lesions and repair intermediates due to inadequate repair can further impede the repair of other damaged sites nearby. BER intermediates are known to be replication blocks that can cause a replication fork to stall and collapse. Collapsing of replication forks can cause DSBs, the most toxic type of DNA lesion. |
Concentration/Dose and Incidence Concordance
Dose and Temporal Concordance
|
Increases in DNA strand breaks leads to Inadequate DNA repair |
Increase in the number of strand breaks can exceed the repair capacity (DSB: NHEJ or HR; SSB: SSBR), resulting in prolonged presence of strand breaks (lack of repair). Increase in the occurrence of NHEJ may also increase the incidence of two incorrect ends being joined, altering the DNA sequence. DSBs may also lead to mutagenic salvage DNA repair pathways such as break‐induced replication (BIR) and microhomology‐mediated break‐induced replication (MMBIR). |
Concentration and Incidence Concordance
Temporal Concordance
|
Inadequate DNA repair leads to Increases in Mutations |
Higher incidences of NHEJ and mutagenic salvage repair can increase the chance of incorrect joining of two broken ends, altering the DNA sequence. Unrepaired base lesions can lead to point mutations, especially if they are able to form stable base pairs with incoming nucleotides during replication (e.g., 8‐oxo‐dG base pairing with adenine). |
Incidence and Concentration Concordance
Temporal Concordance
|
Inadequate DNA repair leads to Increases in Chromosomal Aberrations | If DSBs are not repaired in a timely manner, the ends can shift away from the original position, reducing the likelihood of error‐free repair. Unrepaired strand breaks and mis‐joined ends by incorrect repair can result in translocation, inversion, deletion of sections (unincorporated fragments), and other structural aberrations of the chromosome (e.g., ring and loop formation). |
Concentration/Dose and Incidence Concordance
Temporal Concordance
|