| AKR1C | Aldo-keto reductase 1C |
| ASC1 | Activating signal co-integrator 1 |
| ATF6 | Activating transcription factor 6 |
| ATM | Ataxia–telangiectasia mutated |
| CDK5 | Cyclin-dependent kinase 5 |
| DDR | DNA damage response |
| DSBs | Double-strand breaks |
| DUBs | Deubiquitinating enzymes |
| ER | Endoplasmic reticulum |
| ERα | Estrogen receptor-α |
| ERAD | ER-associated degradation |
| HCC | Hepatocellular carcinoma |
| HR | Homologous recombination |
| HSC | Hematopoietic stem cell |
| IRE1α | Inositol-requiring enzyme 1α |
| lincRNA | Long intergenic RNA |
| LncRNA | Long non-coding RNA |
| NHEJ | Non-homologous end-joining |
| NLS | Nuclear localization signal |
| PERK | Protein kinase-like ER kinase |
| PTMs | Post-translational modifications |
| RING | Really interesting new gene |
| SCNAs | Somatic copy number alterations |
| UBA5 | Ubiquitin-like modifier-activating enzyme 5 |
| UBLs | Ubiquitin-like molecules |
| UFC1 | UFM1-conjugating enzyme 1 |
| UFL1 | UFM1-specific ligase 1 |
| UFM1 | Ubiquitin-fold modifier 1 |
| ULPs | Ubiquitin-like protein-specific proteases |
| UPR | Unfolded protein response |