TABLE 1.
Probes used in this study
| Probe | Specificity | Sequence (5′-3′) | Name (OPD nomenclature)a | Reference |
|---|---|---|---|---|
| Univ1390 | Universal | GACGGGCGGTGTGTACAA | S-∗-Univ-1390-a-A-18 | 25 |
| Eub338 | Domain Bacteria | GCTGCCTCCCGTAGGAGT | S-D-Bact-0338-a-A-18 | 2 |
| Erec482 | C. coccoides-Eubacterium rectale group | GCTTCTTAGTCA(A/G)GTACCG | S-∗-Erec-0482-a-A-19 | 12 |
| Clept1240 | C. leptum group | GTTTT(A/G)TCAACGGCAGTC | S-G-Clept-1240-a-A-18 | 22 |
| Bacto1080 | Bacteroides cluster | GCACTTAAGCCGACACCT | S-∗-Bacto-1080-a-A-18 | 8 |
| Bif228 | Bifidobacterium | GATAGGACGCGACCCCAT | S-G-Bif-228-a-A-18 | I. Mangin, Y. Bouhnik, A. Suan, V. Rochet, L. Raskine, P. Crenn, and J. Doŕe, unpublished data |
| E.coli1513 | E. coli | CACCGTAGTGCCTCGTCATCA | 20 | |
| Lab158 | Lactobacillus-Enterococcus | GGTATTAGCA(C/T)CTGTTTCCA | S-G-Lab-0158-a-A-20 | 14 |
a
Probe names are in accordance with the Oligonucleotide Probe Database (OPD) (1).