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. 2022 Jul 27;22:647. doi: 10.1186/s12879-022-07628-4

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© The Author(s) 2022

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 3 — A Estimated daily growth rate of the log odds of each lineage detected relative to all other lineages. Shown are both lineages with a growth rate in proportion not significantly different to zero (black) and those with a growth rate in proportion significantly different to zero (coloured). B–G Raw estimates of the daily proportions (points) with 95% confidence intervals (error bars) for lineages with a growth rate in proportion significantly different to zero: B.1.617.2 (B, pink), AY.4.2 (C, yellow), AY.4 (D, dark green), AY.111 (E, orange), AY.39 (F, purple), AY.98.1 (G, light green). Also shown is the best-fit Bayesian logistic regression model with central estimate (solid line) and 95% credible interval (shaded region)