| PPI | Protein-protein interaction. |
| NA | Network alignment. |
| HTO | High-throughput omics. |
| GWAS | Genome-wide association studies. |
| NGS | Next-generation sequencing. |
| Y2H | Yeast two-hybrid. |
| MS | Mass Spectrometry. |
| EC number | Enzyme commission. |
| BioPAX | Biological pathway exchange. |
| PSI-MI | Proteomics standards initiative—molecular interaction. |
| INOH | Integrating network objects with hierarchies. |
| KEGG | Kyoto encyclopedia of genes and genomes. |
| SMPDB | Small molecule pathway database. |
| DIP | Database of interacting proteins. |
| BioGRID | Biological general repository for interaction datasets. |
| MINT | Molecular interaction database. |
| I2D | Interologous interaction database. |
| STRING | Search tool for the retrieval of interacting genes/proteins database. |
| AT | Arabidopsis thaliana. |
| BT | Bos taurus. |
| BS | Bacillus subtilis. |
| CE | Caenorhabditis elegans. |
| CS | Chlorocebus sabaeus. |
| CG | Cricetulus griseus. |
| DR | Danio rerio. |
| DM | Drosophila melanogaster. |
| EC | Escherichia coli. |
| GG | Gallus gallus. |
| HS | Homo sapiens. |
| HP | Helicobacter pylori. |
| MM | Mus musculus. |
| RN | Rattus norvegicus. |
| SC | Saccharomyces cerevisiae. |
| SP | Schizosaccharomyces pombe. |