Table 2.

Summary of phylogenetic analyses in this study.

Matrix	Prior partition	Final partition	Model	UFBS branch support1				Major topology2	Excluded topology2,3
				Node A	Node B	Node C	Node D
67CDS + IGS/INTRON	By gene by codon positions; by spacer/intron	Inferred by ModelFinder	Inferred by ModelFinder	96	89	–	–	I	II
67CDS + IGS/INTRON	By gene by codon positions; by spacer/intron	By gene by codon positions; spacer/intron	GTR + F + R10	92	91	–	–	I	None
67CDS + IGS/INTRON	n.a.	n.a.	GTR + FO*H4	97	92	–	–	I	II
67CDS + IGS/INTRON	No	No	GTR + F + R10	77	99	–	-	I	II
67CDS	By gene by codon positions	Inferred by ModelFinder	Inferred by ModelFinder	98	52	–	–	I	None
67CDS	By gene by codon positions	By gene by codon positions	GTR + F + R10	96	–	50	–	II	None
67CDS	n.a.	n.a.	GTR + FO*H4	99	–	68	–	II	II
67CDS	No	No	GTR + F + R10	98	60	–	–	I	III
codon1 + 2	By gene	Inferred by ModelFinder	Inferred by ModelFinder	56	69	–	–	I	I, II
codon1 + 2	By gene	By gene	GTR + F + R10	57	69	–	–	I	None
codon1 + 2	n.a.	n.a.	GTR + FO*H4	37	46	–	–	I	I, II
codon1 + 2	No	No	GTR + F + R10	-	58	–	46	III	None
codon3	By gene	Inferred by ModelFinder	Inferred by ModelFinder	99	–	77	–	II	III
codon3	By gene	By gene	GTR + F + R10	99	–	92	–	II	III
codon3	n.a.	n.a.	GTR + FO*H4	98	–	61	–	II	None
codon3	No	No	GTR + F + R10	98	–	74	–	II	III
IGS/INTRON	By spacer/intron	Inferred by ModelFinder	Inferred by ModelFinder	–	96	–	61	III	II
IGS/INTRON	By spacer/intron	By spacer/intron	GTR + F + R10	–	96	–	77	III	II
IGS/INTRON	n.a.	n.a.	GTR + FO*H4	–	98	–	65	III	II
IGS/INTRON	No	No	GTR + F + R10	–	98	–	58	III	II
rpoC2 + rbcL + trnL-L-F	By gene by codon positions; spacer/intron	Inferred by ModelFinder	Inferred by ModelFinder	–	61	–	50	III	n.a.

¹Showing only values from the major topology.

²The topologies in Figure 2.

³The significantly (p < 0.05) excluded topology inferred by one of these methods: bp-RELL, p-KH, p-SH, p-WKH, p-WSH, c-ELW, and p-AU, detailed in “Topology Tests” of Minh et al. (2020).