TABLE 4.
Grouping of microbes associated with sample AT425
| Representative sequence | No. of clones | Nearest relativea | Phylogenetic groupb | Similarityc |
|---|---|---|---|---|
| Bacteria (127 clones) | ||||
| AT425 EubE10 | 15 | Propionibacterium acnes | Actinobacteria | 0.99 |
| AT425 EubC5 | 11 | Actinomycetales sp. strain TM56 | Actinobacteria | 0.88 |
| AT425 EubA8 | 3 | Propionibacterium acnes | Actinobacteria | 0.95 |
| AT425 EubD11 | 3 | Arthrobacter citreus | Actinobacteria | 0.99 |
| AT425 EubY10 | 1 | Frankia sp. strain Cea5.1 | Actinobacteria | 0.89 |
| AT425 EubB10 | 8 | Streptococcus gordonii | Low G + C Firmicutes | 0.98 |
| AT425 Eub41 | 1 | Staphylococcus caprae | Low G + C Firmicutes | 0.99 |
| AT425 EubF1 | 2 | Hydrocarbon-contaminated aquifer clone WCHB1-81 | Firmicutes? | 0.91 |
| AT425 EubA5 | 1 | Benzene-mineralizing consortium clone SB-45 | Firmicutes? | 0.98 |
| AT425 EubD3 | 8 | Stenotrophomonas maltophila | α-Proteobacteria | 0.99 |
| AT425 EubE3 | 9 | Ralstonia pickettii | β-Proteobacteria | 0.99 |
| AT425 Eub48 | 1 | Herbaspirillum rubrisalbicans | β-Proteobacteria | 0.97 |
| AT425 EubA4 | 1 | Lautropia mirabilis | β-Proteobacteria | 0.99 |
| AT425 EubC3 | 36 | Pseudomonas fluorescens/deep sea clone BD5-14 | γ-Proteobacteria | 0.98 |
| AT425 EubD5 | 2 | Deep sea clone BD5-14 | γ-Proteobacteria | 0.94 |
| AT425 EubD9 | 5 | Hydrocarbon seep clone Eel-BE1C3 | δ-Proteobacteria | 0.98 |
| AT425 EubF5 | 1 | Syntrophus buswellii/trichlorobenzene-degrading consortium clone SJA-63 | δ-Proteobacteria | 0.93 |
| AT425 EubA6 | 1 | Flavobacterium ferrugineum | CFB | 0.92 |
| AT425 EubC9 | 4 | Thermus aquaticus YT-1 | Thermus and relatives | 1.00 |
| AT425 EubC11 | 14 | Deep sea clone BD2-11 | Unknown | 0.83 |
| Archaea (93 clones) | ||||
| AT425 ArC7 | 73 | Methanosaeta sp. strain clone A1 | Methanosarcinales | 0.95 |
| AT425 ArD2 | 2 | Hydrocarbon seep clone Eel-TA1a4 | ANME-2 | 0.95 |
| AT425 ArE12 | 1 | Hydrocarbon seep clone Eel-TA1a4 | ANME-2 | 0.95 |
| AT425 ArB7 | 8 | Hydrocarbon seep clone Eel-BA2e8 | ANME-1 | 0.99 |
| AT425 ArB9 | 8 | Hydrocarbon seep clone Eel-BA2e8 | ANME-1 | 0.93 |
| AT425 ArD10 | 1 | Salt marsh clone 2C84 | Salt marsh | 0.94 |